Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_967 and HP15_968 are separated by 116 nucleotides HP15_968 and HP15_969 are separated by 591 nucleotides
HP15_967: HP15_967 - hypothetical protein, at 980,738 to 981,184
_967
HP15_968: HP15_968 - hypothetical protein, at 981,301 to 981,921
_968
HP15_969: HP15_969 - hypothetical protein, at 982,513 to 983,028
_969
Position (kb) 981
982 Strain fitness (log2 ratio) -2
-1
0
1
2 at 980.371 kb on + strand at 980.371 kb on + strand at 980.421 kb on - strand at 980.421 kb on - strand at 980.458 kb on + strand at 980.491 kb on + strand at 980.585 kb on + strand at 980.590 kb on - strand at 980.614 kb on - strand at 980.824 kb on + strand, within HP15_967 at 980.855 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.869 kb on + strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.877 kb on - strand, within HP15_967 at 980.894 kb on - strand, within HP15_967 at 980.902 kb on + strand, within HP15_967 at 980.906 kb on + strand, within HP15_967 at 980.914 kb on - strand, within HP15_967 at 980.968 kb on + strand, within HP15_967 at 980.968 kb on + strand, within HP15_967 at 980.968 kb on + strand, within HP15_967 at 980.976 kb on - strand, within HP15_967 at 980.976 kb on - strand, within HP15_967 at 980.991 kb on - strand, within HP15_967 at 980.991 kb on - strand, within HP15_967 at 980.991 kb on - strand, within HP15_967 at 981.001 kb on - strand, within HP15_967 at 981.225 kb on - strand at 981.225 kb on - strand at 981.225 kb on - strand at 981.225 kb on - strand at 981.273 kb on + strand at 981.281 kb on - strand at 981.281 kb on - strand at 981.299 kb on - strand at 981.389 kb on + strand, within HP15_968 at 981.528 kb on + strand, within HP15_968 at 981.640 kb on + strand, within HP15_968 at 981.811 kb on + strand, within HP15_968 at 981.853 kb on - strand, within HP15_968 at 981.873 kb on + strand at 981.950 kb on - strand at 981.952 kb on + strand at 981.963 kb on - strand at 981.965 kb on + strand at 981.973 kb on - strand at 981.973 kb on - strand at 981.973 kb on - strand at 982.135 kb on - strand at 982.164 kb on + strand at 982.172 kb on - strand at 982.238 kb on - strand at 982.267 kb on + strand at 982.399 kb on - strand at 982.423 kb on + strand at 982.423 kb on + strand at 982.426 kb on - strand at 982.431 kb on + strand at 982.466 kb on + strand at 982.466 kb on + strand at 982.497 kb on + strand at 982.538 kb on - strand at 982.608 kb on + strand, within HP15_969 at 982.739 kb on - strand, within HP15_969 at 982.761 kb on + strand, within HP15_969 at 982.815 kb on + strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.823 kb on - strand, within HP15_969 at 982.830 kb on + strand, within HP15_969 at 982.915 kb on + strand, within HP15_969 at 982.915 kb on + strand, within HP15_969
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 980,371 + -0.1 980,371 + -0.1 980,421 - -1.1 980,421 - +1.6 980,458 + +1.8 980,491 + -1.4 980,585 + -0.5 980,590 - +1.0 980,614 - -2.3 980,824 + HP15_967 0.19 +0.0 980,855 + HP15_967 0.26 -0.3 980,869 + HP15_967 0.29 -0.3 980,869 + HP15_967 0.29 -1.6 980,869 + HP15_967 0.29 -0.7 980,869 + HP15_967 0.29 +0.5 980,869 + HP15_967 0.29 -2.6 980,877 - HP15_967 0.31 +1.3 980,877 - HP15_967 0.31 -1.9 980,877 - HP15_967 0.31 -1.2 980,877 - HP15_967 0.31 -0.7 980,894 - HP15_967 0.35 +1.0 980,902 + HP15_967 0.37 -0.7 980,906 + HP15_967 0.38 -0.5 980,914 - HP15_967 0.39 -0.8 980,968 + HP15_967 0.51 -0.4 980,968 + HP15_967 0.51 -2.3 980,968 + HP15_967 0.51 +0.2 980,976 - HP15_967 0.53 -0.8 980,976 - HP15_967 0.53 -0.7 980,991 - HP15_967 0.57 +0.5 980,991 - HP15_967 0.57 +0.1 980,991 - HP15_967 0.57 +0.4 981,001 - HP15_967 0.59 -1.1 981,225 - +0.4 981,225 - +0.5 981,225 - -1.1 981,225 - -0.1 981,273 + -0.2 981,281 - +2.0 981,281 - +0.4 981,299 - -0.7 981,389 + HP15_968 0.14 +2.1 981,528 + HP15_968 0.37 -0.7 981,640 + HP15_968 0.55 +2.3 981,811 + HP15_968 0.82 -0.2 981,853 - HP15_968 0.89 +2.6 981,873 + -0.3 981,950 - -0.9 981,952 + +0.8 981,963 - -0.2 981,965 + +0.9 981,973 - -0.7 981,973 - +1.5 981,973 - -0.6 982,135 - -0.8 982,164 + -0.8 982,172 - +1.0 982,238 - +0.7 982,267 + -0.6 982,399 - +0.9 982,423 + +1.0 982,423 + -0.8 982,426 - -0.8 982,431 + +0.1 982,466 + -0.4 982,466 + +0.4 982,497 + -0.6 982,538 - -0.6 982,608 + HP15_969 0.18 -1.1 982,739 - HP15_969 0.44 -0.5 982,761 + HP15_969 0.48 -1.2 982,815 + HP15_969 0.59 +1.2 982,823 - HP15_969 0.60 -2.2 982,823 - HP15_969 0.60 -1.9 982,823 - HP15_969 0.60 +0.2 982,823 - HP15_969 0.60 -0.2 982,830 + HP15_969 0.61 +0.5 982,915 + HP15_969 0.78 +1.6 982,915 + HP15_969 0.78 +0.8
Or see this region's nucleotide sequence