Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_943 and HP15_944 are separated by 238 nucleotides HP15_944 and HP15_945 are separated by 345 nucleotides
HP15_943: HP15_943 - aldehyde dehydrogenase family protein, at 958,470 to 959,987
_943
HP15_944: HP15_944 - FAD dependent oxidoreductase, at 960,226 to 961,452
_944
HP15_945: HP15_945 - protein containing immunoglobulin I-set domain, at 961,798 to 963,255
_945
Position (kb) 960
961
962 Strain fitness (log2 ratio) -2
-1
0
1
2 at 959.261 kb on - strand, within HP15_943 at 959.341 kb on + strand, within HP15_943 at 959.349 kb on - strand, within HP15_943 at 959.360 kb on + strand, within HP15_943 at 959.483 kb on + strand, within HP15_943 at 959.496 kb on - strand, within HP15_943 at 959.499 kb on - strand, within HP15_943 at 959.567 kb on + strand, within HP15_943 at 959.642 kb on + strand, within HP15_943 at 959.691 kb on - strand, within HP15_943 at 959.721 kb on - strand, within HP15_943 at 959.738 kb on + strand, within HP15_943 at 959.799 kb on - strand, within HP15_943 at 959.968 kb on - strand at 960.002 kb on + strand at 960.002 kb on + strand at 960.094 kb on + strand at 960.094 kb on + strand at 960.094 kb on + strand at 960.102 kb on - strand at 960.102 kb on - strand at 960.102 kb on - strand at 960.245 kb on + strand at 960.246 kb on + strand at 960.288 kb on - strand at 960.309 kb on - strand at 960.365 kb on - strand, within HP15_944 at 960.420 kb on - strand, within HP15_944 at 960.422 kb on + strand, within HP15_944 at 960.430 kb on - strand, within HP15_944 at 960.493 kb on + strand, within HP15_944 at 960.512 kb on - strand, within HP15_944 at 960.566 kb on - strand, within HP15_944 at 960.571 kb on - strand, within HP15_944 at 960.571 kb on - strand, within HP15_944 at 960.625 kb on - strand, within HP15_944 at 960.713 kb on + strand, within HP15_944 at 960.810 kb on + strand, within HP15_944 at 960.833 kb on - strand, within HP15_944 at 961.077 kb on + strand, within HP15_944 at 961.085 kb on - strand, within HP15_944 at 961.254 kb on + strand, within HP15_944 at 961.273 kb on - strand, within HP15_944 at 961.334 kb on + strand at 961.635 kb on - strand at 961.637 kb on - strand at 961.637 kb on - strand at 961.637 kb on - strand at 961.894 kb on - strand at 961.900 kb on + strand at 961.908 kb on - strand at 961.908 kb on - strand at 962.006 kb on - strand, within HP15_945 at 962.050 kb on - strand, within HP15_945 at 962.072 kb on + strand, within HP15_945 at 962.080 kb on - strand, within HP15_945 at 962.110 kb on + strand, within HP15_945 at 962.139 kb on + strand, within HP15_945 at 962.240 kb on + strand, within HP15_945 at 962.240 kb on + strand, within HP15_945 at 962.241 kb on + strand, within HP15_945 at 962.293 kb on - strand, within HP15_945 at 962.386 kb on - strand, within HP15_945 at 962.396 kb on - strand, within HP15_945
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 959,261 - HP15_943 0.52 -1.5 959,341 + HP15_943 0.57 -1.0 959,349 - HP15_943 0.58 -0.2 959,360 + HP15_943 0.59 +0.7 959,483 + HP15_943 0.67 -2.0 959,496 - HP15_943 0.68 +1.3 959,499 - HP15_943 0.68 -0.4 959,567 + HP15_943 0.72 +1.7 959,642 + HP15_943 0.77 -0.7 959,691 - HP15_943 0.80 -1.1 959,721 - HP15_943 0.82 +1.4 959,738 + HP15_943 0.84 +0.4 959,799 - HP15_943 0.88 -1.4 959,968 - +0.1 960,002 + -0.3 960,002 + +1.1 960,094 + -0.2 960,094 + +1.2 960,094 + -0.9 960,102 - -0.1 960,102 - -1.0 960,102 - +1.3 960,245 + -0.2 960,246 + +0.6 960,288 - -0.7 960,309 - -1.2 960,365 - HP15_944 0.11 -0.2 960,420 - HP15_944 0.16 -0.2 960,422 + HP15_944 0.16 -1.4 960,430 - HP15_944 0.17 +0.2 960,493 + HP15_944 0.22 -0.5 960,512 - HP15_944 0.23 +1.4 960,566 - HP15_944 0.28 -0.4 960,571 - HP15_944 0.28 -1.3 960,571 - HP15_944 0.28 -1.3 960,625 - HP15_944 0.33 +0.1 960,713 + HP15_944 0.40 -2.1 960,810 + HP15_944 0.48 -0.9 960,833 - HP15_944 0.49 +0.0 961,077 + HP15_944 0.69 +1.2 961,085 - HP15_944 0.70 -1.1 961,254 + HP15_944 0.84 +0.4 961,273 - HP15_944 0.85 +1.8 961,334 + -0.3 961,635 - -0.3 961,637 - +0.0 961,637 - -1.2 961,637 - -1.3 961,894 - +0.9 961,900 + +0.4 961,908 - +0.7 961,908 - +1.0 962,006 - HP15_945 0.14 -0.6 962,050 - HP15_945 0.17 +1.1 962,072 + HP15_945 0.19 -0.3 962,080 - HP15_945 0.19 -0.1 962,110 + HP15_945 0.21 -1.8 962,139 + HP15_945 0.23 +1.9 962,240 + HP15_945 0.30 +0.9 962,240 + HP15_945 0.30 +1.7 962,241 + HP15_945 0.30 +1.7 962,293 - HP15_945 0.34 +1.3 962,386 - HP15_945 0.40 -0.3 962,396 - HP15_945 0.41 -0.8
Or see this region's nucleotide sequence