Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_95 and HP15_96 are separated by 217 nucleotides HP15_96 and HP15_97 are separated by 4 nucleotides
HP15_95: HP15_95 - cation diffusion facilitator family transporter, at 98,137 to 98,925
_95
HP15_96: HP15_96 - lipoprotein signal peptidase, at 99,143 to 99,658
_96
HP15_97: HP15_97 - cation efflux system protein, at 99,663 to 100,559
_97
Position (kb) 99
100 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 98.145 kb on + strand at 98.245 kb on + strand, within HP15_95 at 98.304 kb on - strand, within HP15_95 at 98.342 kb on + strand, within HP15_95 at 98.411 kb on + strand, within HP15_95 at 98.411 kb on + strand, within HP15_95 at 98.414 kb on - strand, within HP15_95 at 98.427 kb on + strand, within HP15_95 at 98.429 kb on - strand, within HP15_95 at 98.477 kb on - strand, within HP15_95 at 98.550 kb on - strand, within HP15_95 at 98.576 kb on + strand, within HP15_95 at 98.621 kb on + strand, within HP15_95 at 98.635 kb on - strand, within HP15_95 at 98.666 kb on - strand, within HP15_95 at 98.812 kb on + strand, within HP15_95 at 98.820 kb on - strand, within HP15_95 at 98.820 kb on - strand, within HP15_95 at 98.826 kb on - strand, within HP15_95 at 98.852 kb on - strand at 98.904 kb on - strand at 98.962 kb on + strand at 98.970 kb on - strand at 98.970 kb on - strand at 98.999 kb on + strand at 98.999 kb on + strand at 99.007 kb on - strand at 99.007 kb on - strand at 99.098 kb on + strand at 99.113 kb on + strand at 99.178 kb on - strand at 99.180 kb on - strand at 99.248 kb on + strand, within HP15_96 at 99.254 kb on - strand, within HP15_96 at 99.255 kb on - strand, within HP15_96 at 99.365 kb on - strand, within HP15_96 at 99.368 kb on + strand, within HP15_96 at 99.399 kb on + strand, within HP15_96 at 99.404 kb on + strand, within HP15_96 at 99.422 kb on - strand, within HP15_96 at 99.422 kb on - strand, within HP15_96 at 99.521 kb on + strand, within HP15_96 at 99.552 kb on + strand, within HP15_96 at 99.560 kb on - strand, within HP15_96 at 99.687 kb on - strand at 99.699 kb on + strand at 99.701 kb on + strand at 99.701 kb on + strand at 99.709 kb on - strand at 99.752 kb on - strand at 99.793 kb on - strand, within HP15_97 at 99.793 kb on - strand, within HP15_97 at 99.836 kb on + strand, within HP15_97 at 99.885 kb on - strand, within HP15_97 at 99.972 kb on + strand, within HP15_97 at 100.029 kb on - strand, within HP15_97 at 100.034 kb on - strand, within HP15_97 at 100.069 kb on - strand, within HP15_97 at 100.069 kb on - strand, within HP15_97 at 100.084 kb on - strand, within HP15_97 at 100.139 kb on - strand, within HP15_97 at 100.219 kb on + strand, within HP15_97 at 100.270 kb on - strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.289 kb on + strand, within HP15_97 at 100.297 kb on + strand, within HP15_97 at 100.297 kb on + strand, within HP15_97 at 100.331 kb on - strand, within HP15_97 at 100.464 kb on + strand, within HP15_97 at 100.513 kb on + strand at 100.530 kb on + strand at 100.536 kb on - strand at 100.538 kb on - strand at 100.637 kb on - strand at 100.653 kb on + strand at 100.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 98,145 + +2.0 98,245 + HP15_95 0.14 -1.8 98,304 - HP15_95 0.21 -1.2 98,342 + HP15_95 0.26 -0.1 98,411 + HP15_95 0.35 -0.7 98,411 + HP15_95 0.35 +0.8 98,414 - HP15_95 0.35 -1.0 98,427 + HP15_95 0.37 +0.0 98,429 - HP15_95 0.37 -0.6 98,477 - HP15_95 0.43 +2.2 98,550 - HP15_95 0.52 -1.4 98,576 + HP15_95 0.56 -0.6 98,621 + HP15_95 0.61 -0.4 98,635 - HP15_95 0.63 +1.5 98,666 - HP15_95 0.67 +1.5 98,812 + HP15_95 0.86 +1.3 98,820 - HP15_95 0.87 +2.1 98,820 - HP15_95 0.87 -0.9 98,826 - HP15_95 0.87 -0.6 98,852 - +0.8 98,904 - +2.3 98,962 + -0.4 98,970 - +1.8 98,970 - -0.5 98,999 + +1.1 98,999 + -1.3 99,007 - -2.2 99,007 - +2.9 99,098 + +0.9 99,113 + -1.4 99,178 - +0.8 99,180 - -0.8 99,248 + HP15_96 0.20 -0.0 99,254 - HP15_96 0.22 +1.1 99,255 - HP15_96 0.22 -0.4 99,365 - HP15_96 0.43 -0.6 99,368 + HP15_96 0.44 -2.3 99,399 + HP15_96 0.50 -0.1 99,404 + HP15_96 0.51 +1.3 99,422 - HP15_96 0.54 -1.2 99,422 - HP15_96 0.54 +1.5 99,521 + HP15_96 0.73 +1.1 99,552 + HP15_96 0.79 +1.3 99,560 - HP15_96 0.81 -1.7 99,687 - -1.6 99,699 + +0.2 99,701 + +2.7 99,701 + -0.9 99,709 - +0.6 99,752 - +1.7 99,793 - HP15_97 0.14 +0.9 99,793 - HP15_97 0.14 +4.3 99,836 + HP15_97 0.19 -1.4 99,885 - HP15_97 0.25 +1.5 99,972 + HP15_97 0.34 +0.6 100,029 - HP15_97 0.41 +0.9 100,034 - HP15_97 0.41 +1.6 100,069 - HP15_97 0.45 +0.3 100,069 - HP15_97 0.45 +2.5 100,084 - HP15_97 0.47 +2.3 100,139 - HP15_97 0.53 +1.9 100,219 + HP15_97 0.62 +0.3 100,270 - HP15_97 0.68 +1.1 100,289 + HP15_97 0.70 +1.5 100,289 + HP15_97 0.70 +0.4 100,289 + HP15_97 0.70 -0.4 100,289 + HP15_97 0.70 -2.3 100,289 + HP15_97 0.70 +2.7 100,289 + HP15_97 0.70 +1.0 100,289 + HP15_97 0.70 +0.9 100,297 + HP15_97 0.71 +0.6 100,297 + HP15_97 0.71 -0.5 100,331 - HP15_97 0.74 +1.2 100,464 + HP15_97 0.89 -0.3 100,513 + +1.9 100,530 + -2.6 100,536 - -0.4 100,538 - +2.6 100,637 - -0.0 100,653 + +1.3 100,653 + +0.9
Or see this region's nucleotide sequence