Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_897 and HP15_898 are separated by 21 nucleotides HP15_898 and HP15_899 are separated by 73 nucleotides HP15_899 and HP15_900 are separated by 12 nucleotides HP15_900 and HP15_901 are separated by 66 nucleotides
HP15_897: HP15_897 - protein containing forkhead-associated domain, at 911,597 to 911,947
_897
HP15_898: HP15_898 - glutamine amidotransferase class-I, at 911,969 to 912,679
_898
HP15_899: HP15_899 - protein YeeN, at 912,753 to 913,478
_899
HP15_900: HP15_900 - hypothetical protein, at 913,491 to 913,652
_900
HP15_901: HP15_901 - TPR repeat, SEL1 subfamily protein-like protein, at 913,719 to 914,300
_901
Position (kb) 912
913
914 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 912.143 kb on - strand, within HP15_898 at 912.184 kb on - strand, within HP15_898 at 912.317 kb on + strand, within HP15_898 at 912.367 kb on - strand, within HP15_898 at 912.369 kb on + strand, within HP15_898 at 912.496 kb on + strand, within HP15_898 at 912.598 kb on + strand, within HP15_898 at 913.088 kb on - strand, within HP15_899 at 913.102 kb on + strand, within HP15_899 at 913.161 kb on + strand, within HP15_899 at 913.223 kb on - strand, within HP15_899 at 913.261 kb on + strand, within HP15_899 at 913.269 kb on - strand, within HP15_899 at 913.312 kb on + strand, within HP15_899 at 913.348 kb on - strand, within HP15_899 at 913.350 kb on + strand, within HP15_899 at 913.406 kb on - strand at 913.416 kb on - strand at 913.558 kb on + strand, within HP15_900 at 913.627 kb on - strand, within HP15_900 at 913.660 kb on + strand at 913.815 kb on - strand, within HP15_901 at 913.900 kb on - strand, within HP15_901 at 913.933 kb on + strand, within HP15_901 at 913.933 kb on + strand, within HP15_901 at 914.053 kb on - strand, within HP15_901 at 914.215 kb on + strand, within HP15_901 at 914.241 kb on + strand, within HP15_901 at 914.383 kb on + strand at 914.407 kb on - strand at 914.419 kb on - strand at 914.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 912,143 - HP15_898 0.24 -0.8 912,184 - HP15_898 0.30 +3.3 912,317 + HP15_898 0.49 -0.6 912,367 - HP15_898 0.56 +1.0 912,369 + HP15_898 0.56 -0.1 912,496 + HP15_898 0.74 -1.7 912,598 + HP15_898 0.88 +2.2 913,088 - HP15_899 0.46 +0.4 913,102 + HP15_899 0.48 -0.2 913,161 + HP15_899 0.56 +0.9 913,223 - HP15_899 0.65 -0.6 913,261 + HP15_899 0.70 +0.8 913,269 - HP15_899 0.71 -0.3 913,312 + HP15_899 0.77 -0.2 913,348 - HP15_899 0.82 +0.5 913,350 + HP15_899 0.82 +0.8 913,406 - +0.3 913,416 - +0.2 913,558 + HP15_900 0.41 -1.2 913,627 - HP15_900 0.84 -0.5 913,660 + +0.4 913,815 - HP15_901 0.16 +0.1 913,900 - HP15_901 0.31 -1.4 913,933 + HP15_901 0.37 -1.4 913,933 + HP15_901 0.37 -0.2 914,053 - HP15_901 0.57 +1.0 914,215 + HP15_901 0.85 -0.7 914,241 + HP15_901 0.90 -2.4 914,383 + +1.9 914,407 - -0.3 914,419 - -3.2 914,424 - +0.4
Or see this region's nucleotide sequence