Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_792 and HP15_793 are separated by 136 nucleotides HP15_793 and HP15_794 are separated by 32 nucleotides HP15_794 and HP15_795 are separated by 143 nucleotides HP15_795 and HP15_796 are separated by 78 nucleotides
HP15_792: HP15_792 - nucleoside triphosphate pyrophosphohydrolase, at 806,654 to 807,511
_792
HP15_793: HP15_793 - conserved hypothetical protein, at 807,648 to 807,992
_793
HP15_794: HP15_794 - conserved hypothetical protein, at 808,025 to 808,258
_794
HP15_795: HP15_795 - phosphoenolpyruvate carboxylase, at 808,402 to 811,008
_795
HP15_796: HP15_796 - signal transduction protein, at 811,087 to 812,457
_796
Position (kb) 808
809
810
811
812 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 807.475 kb on + strand at 807.510 kb on + strand at 807.822 kb on - strand, within HP15_793 at 808.079 kb on + strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.103 kb on + strand, within HP15_794 at 808.186 kb on + strand, within HP15_794 at 808.279 kb on + strand at 808.365 kb on + strand at 808.449 kb on + strand at 808.664 kb on - strand, within HP15_795 at 808.768 kb on - strand, within HP15_795 at 808.843 kb on - strand, within HP15_795 at 808.942 kb on - strand, within HP15_795 at 809.170 kb on + strand, within HP15_795 at 809.225 kb on + strand, within HP15_795 at 809.282 kb on + strand, within HP15_795 at 809.290 kb on + strand, within HP15_795 at 809.345 kb on + strand, within HP15_795 at 809.348 kb on - strand, within HP15_795 at 809.458 kb on + strand, within HP15_795 at 809.599 kb on - strand, within HP15_795 at 809.726 kb on + strand, within HP15_795 at 809.765 kb on + strand, within HP15_795 at 809.771 kb on + strand, within HP15_795 at 809.803 kb on - strand, within HP15_795 at 809.806 kb on - strand, within HP15_795 at 809.904 kb on - strand, within HP15_795 at 809.919 kb on + strand, within HP15_795 at 809.927 kb on - strand, within HP15_795 at 810.076 kb on + strand, within HP15_795 at 810.150 kb on - strand, within HP15_795 at 810.322 kb on + strand, within HP15_795 at 810.345 kb on + strand, within HP15_795 at 810.421 kb on - strand, within HP15_795 at 810.528 kb on - strand, within HP15_795 at 810.574 kb on - strand, within HP15_795 at 810.585 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.669 kb on + strand, within HP15_795 at 810.674 kb on + strand, within HP15_795 at 810.677 kb on - strand, within HP15_795 at 810.677 kb on - strand, within HP15_795 at 810.698 kb on + strand, within HP15_795 at 810.706 kb on - strand, within HP15_795 at 810.848 kb on - strand at 810.858 kb on + strand at 811.211 kb on + strand at 811.211 kb on + strand at 811.219 kb on - strand at 811.219 kb on - strand at 811.384 kb on - strand, within HP15_796 at 811.698 kb on + strand, within HP15_796 at 811.715 kb on - strand, within HP15_796 at 811.816 kb on - strand, within HP15_796 at 811.816 kb on - strand, within HP15_796 at 811.843 kb on + strand, within HP15_796 at 811.846 kb on - strand, within HP15_796 at 811.868 kb on + strand, within HP15_796 at 811.920 kb on + strand, within HP15_796 at 811.921 kb on + strand, within HP15_796 at 811.929 kb on - strand, within HP15_796 at 811.957 kb on - strand, within HP15_796
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 807,475 + -0.5 807,510 + +0.4 807,822 - HP15_793 0.50 -0.6 808,079 + HP15_794 0.23 +1.4 808,087 - HP15_794 0.26 +2.6 808,087 - HP15_794 0.26 -1.0 808,103 + HP15_794 0.33 +0.2 808,186 + HP15_794 0.69 +1.5 808,279 + +0.3 808,365 + +1.0 808,449 + -1.1 808,664 - HP15_795 0.10 -1.6 808,768 - HP15_795 0.14 +1.9 808,843 - HP15_795 0.17 -0.9 808,942 - HP15_795 0.21 -0.7 809,170 + HP15_795 0.29 -1.3 809,225 + HP15_795 0.32 +0.5 809,282 + HP15_795 0.34 +0.1 809,290 + HP15_795 0.34 +1.5 809,345 + HP15_795 0.36 -1.6 809,348 - HP15_795 0.36 -0.3 809,458 + HP15_795 0.41 -0.4 809,599 - HP15_795 0.46 -0.6 809,726 + HP15_795 0.51 +1.2 809,765 + HP15_795 0.52 -0.7 809,771 + HP15_795 0.53 +0.4 809,803 - HP15_795 0.54 +0.7 809,806 - HP15_795 0.54 -0.1 809,904 - HP15_795 0.58 -0.2 809,919 + HP15_795 0.58 +2.7 809,927 - HP15_795 0.58 -0.1 810,076 + HP15_795 0.64 +1.5 810,150 - HP15_795 0.67 +0.3 810,322 + HP15_795 0.74 +0.9 810,345 + HP15_795 0.75 +0.3 810,421 - HP15_795 0.77 -0.7 810,528 - HP15_795 0.82 +2.3 810,574 - HP15_795 0.83 -0.3 810,585 + HP15_795 0.84 -0.1 810,669 + HP15_795 0.87 +0.7 810,669 + HP15_795 0.87 -1.0 810,669 + HP15_795 0.87 -1.4 810,669 + HP15_795 0.87 -0.7 810,674 + HP15_795 0.87 +0.1 810,677 - HP15_795 0.87 +1.5 810,677 - HP15_795 0.87 +0.9 810,698 + HP15_795 0.88 -0.4 810,706 - HP15_795 0.88 -0.7 810,848 - +3.5 810,858 + -1.9 811,211 + +0.7 811,211 + +1.8 811,219 - -1.2 811,219 - +0.9 811,384 - HP15_796 0.22 +1.5 811,698 + HP15_796 0.45 -2.7 811,715 - HP15_796 0.46 -0.0 811,816 - HP15_796 0.53 -1.0 811,816 - HP15_796 0.53 +1.9 811,843 + HP15_796 0.55 -1.8 811,846 - HP15_796 0.55 +0.1 811,868 + HP15_796 0.57 -0.0 811,920 + HP15_796 0.61 -0.5 811,921 + HP15_796 0.61 +1.0 811,929 - HP15_796 0.61 +1.1 811,957 - HP15_796 0.63 -1.3
Or see this region's nucleotide sequence