Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_734 and HP15_735 overlap by 4 nucleotides HP15_735 and HP15_736 overlap by 1 nucleotides HP15_736 and HP15_737 are separated by 115 nucleotides HP15_737 and HP15_738 overlap by 4 nucleotides HP15_738 and HP15_739 are separated by 178 nucleotides
HP15_734: HP15_734 - septum site-determining protein MinC, at 743,854 to 744,615
_734
HP15_735: HP15_735 - type III effector HopPmaJ, at 744,612 to 745,001
_735
HP15_736: HP15_736 - protein containing DUF1244, at 745,001 to 745,279
_736
HP15_737: HP15_737 - DNA polymerase IV, at 745,395 to 746,459
_737
HP15_738: HP15_738 - phosphoesterase, PA-phosphatase, at 746,456 to 746,791
_738
HP15_739: HP15_739 - glycosyl transferase, group 1 family protein, at 746,970 to 748,190
_739
Position (kb) 745
746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 744.418 kb on + strand, within HP15_734 at 744.424 kb on - strand, within HP15_734 at 744.546 kb on - strand at 744.546 kb on - strand at 744.650 kb on + strand at 744.850 kb on - strand, within HP15_735 at 744.889 kb on + strand, within HP15_735 at 744.931 kb on - strand, within HP15_735 at 745.131 kb on + strand, within HP15_736 at 745.131 kb on + strand, within HP15_736 at 745.227 kb on - strand, within HP15_736 at 745.443 kb on + strand at 745.443 kb on + strand at 745.451 kb on - strand at 745.476 kb on - strand at 745.501 kb on - strand at 745.612 kb on - strand, within HP15_737 at 745.639 kb on - strand, within HP15_737 at 745.649 kb on - strand, within HP15_737 at 745.650 kb on - strand, within HP15_737 at 745.731 kb on - strand, within HP15_737 at 745.923 kb on + strand, within HP15_737 at 745.940 kb on + strand, within HP15_737 at 745.986 kb on + strand, within HP15_737 at 745.994 kb on - strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.051 kb on + strand, within HP15_737 at 746.088 kb on - strand, within HP15_737 at 746.141 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.189 kb on - strand, within HP15_737 at 746.293 kb on + strand, within HP15_737 at 746.294 kb on - strand, within HP15_737 at 746.404 kb on - strand at 746.461 kb on + strand at 746.471 kb on + strand at 746.497 kb on - strand, within HP15_738 at 746.504 kb on - strand, within HP15_738 at 746.717 kb on + strand, within HP15_738 at 746.774 kb on - strand at 746.795 kb on - strand at 746.797 kb on + strand at 746.907 kb on + strand at 746.912 kb on + strand at 746.976 kb on - strand at 747.097 kb on - strand, within HP15_739 at 747.101 kb on + strand, within HP15_739 at 747.168 kb on - strand, within HP15_739 at 747.170 kb on + strand, within HP15_739 at 747.182 kb on + strand, within HP15_739 at 747.204 kb on + strand, within HP15_739 at 747.238 kb on - strand, within HP15_739
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 744,418 + HP15_734 0.74 +1.3 744,424 - HP15_734 0.75 -0.3 744,546 - -0.3 744,546 - +2.0 744,650 + -0.2 744,850 - HP15_735 0.61 -0.6 744,889 + HP15_735 0.71 +1.6 744,931 - HP15_735 0.82 +0.2 745,131 + HP15_736 0.47 +0.1 745,131 + HP15_736 0.47 +2.6 745,227 - HP15_736 0.81 -0.6 745,443 + -1.2 745,443 + +1.7 745,451 - +0.5 745,476 - -1.0 745,501 - +1.0 745,612 - HP15_737 0.20 +2.1 745,639 - HP15_737 0.23 +0.1 745,649 - HP15_737 0.24 -0.3 745,650 - HP15_737 0.24 +0.7 745,731 - HP15_737 0.32 +1.6 745,923 + HP15_737 0.50 +0.6 745,940 + HP15_737 0.51 -0.5 745,986 + HP15_737 0.55 +1.5 745,994 - HP15_737 0.56 +1.6 746,051 + HP15_737 0.62 +1.4 746,051 + HP15_737 0.62 +1.1 746,088 - HP15_737 0.65 +0.7 746,141 - HP15_737 0.70 +0.9 746,189 - HP15_737 0.75 -1.2 746,189 - HP15_737 0.75 -1.3 746,293 + HP15_737 0.84 -0.8 746,294 - HP15_737 0.84 -0.2 746,404 - -2.3 746,461 + +0.1 746,471 + -3.0 746,497 - HP15_738 0.12 +0.7 746,504 - HP15_738 0.14 -0.9 746,717 + HP15_738 0.78 +2.3 746,774 - +1.1 746,795 - +0.5 746,797 + -0.6 746,907 + +0.3 746,912 + -1.5 746,976 - -0.8 747,097 - HP15_739 0.10 -2.0 747,101 + HP15_739 0.11 -2.6 747,168 - HP15_739 0.16 -0.2 747,170 + HP15_739 0.16 -1.1 747,182 + HP15_739 0.17 -0.7 747,204 + HP15_739 0.19 -2.1 747,238 - HP15_739 0.22 -0.1
Or see this region's nucleotide sequence