Strain Fitness in Marinobacter adhaerens HP15 around HP15_687

Experiment: monoculture; Experiment B, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_685 and HP15_686 are separated by 35 nucleotidesHP15_686 and HP15_687 are separated by 23 nucleotidesHP15_687 and HP15_688 are separated by 410 nucleotidesHP15_688 and HP15_689 are separated by 96 nucleotidesHP15_689 and HP15_690 overlap by 8 nucleotides HP15_685: HP15_685 - phage repressor, at 701,983 to 702,966 _685 HP15_686: HP15_686 - conserved hypothetical protein, at 703,002 to 703,913 _686 HP15_687: HP15_687 - protein containing domain of unknown function DUF1994, at 703,937 to 704,788 _687 HP15_688: HP15_688 - conserved hypothetical protein, at 705,199 to 705,444 _688 HP15_689: HP15_689 - carbon storage regulator, at 705,541 to 705,729 _689 HP15_690: HP15_690 - hypothetical protein, at 705,722 to 706,051 _690 Position (kb) 703 704 705Strain fitness (log2 ratio) -2 -1 0 1 2 3at 702.986 kb on + strandat 703.046 kb on - strandat 703.046 kb on - strandat 703.107 kb on + strand, within HP15_686at 703.147 kb on - strand, within HP15_686at 703.147 kb on - strand, within HP15_686at 703.279 kb on - strand, within HP15_686at 703.286 kb on + strand, within HP15_686at 703.294 kb on - strand, within HP15_686at 703.340 kb on - strand, within HP15_686at 703.344 kb on + strand, within HP15_686at 703.549 kb on + strand, within HP15_686at 703.551 kb on - strand, within HP15_686at 703.735 kb on + strand, within HP15_686at 703.735 kb on + strand, within HP15_686at 703.735 kb on + strand, within HP15_686at 703.735 kb on + strand, within HP15_686at 703.743 kb on - strand, within HP15_686at 704.053 kb on - strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.107 kb on + strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.115 kb on - strand, within HP15_687at 704.307 kb on + strand, within HP15_687at 704.307 kb on + strand, within HP15_687at 704.315 kb on - strand, within HP15_687at 704.365 kb on + strand, within HP15_687at 704.371 kb on - strand, within HP15_687at 704.378 kb on + strand, within HP15_687at 704.469 kb on + strand, within HP15_687at 704.476 kb on - strand, within HP15_687at 704.635 kb on - strand, within HP15_687at 704.638 kb on + strand, within HP15_687at 704.708 kb on - strandat 705.137 kb on - strandat 705.159 kb on - strandat 705.362 kb on - strand, within HP15_688

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7
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702,986 + +2.0
703,046 - -1.5
703,046 - -1.3
703,107 + HP15_686 0.12 -0.8
703,147 - HP15_686 0.16 -1.7
703,147 - HP15_686 0.16 +1.7
703,279 - HP15_686 0.30 -0.7
703,286 + HP15_686 0.31 -1.0
703,294 - HP15_686 0.32 +1.8
703,340 - HP15_686 0.37 -1.6
703,344 + HP15_686 0.38 +2.6
703,549 + HP15_686 0.60 +1.1
703,551 - HP15_686 0.60 -0.7
703,735 + HP15_686 0.80 +0.5
703,735 + HP15_686 0.80 +1.7
703,735 + HP15_686 0.80 -0.5
703,735 + HP15_686 0.80 +1.2
703,743 - HP15_686 0.81 +2.0
704,053 - HP15_687 0.14 +0.7
704,107 + HP15_687 0.20 -1.7
704,107 + HP15_687 0.20 +1.2
704,107 + HP15_687 0.20 -1.5
704,107 + HP15_687 0.20 -1.3
704,107 + HP15_687 0.20 -0.3
704,107 + HP15_687 0.20 +0.1
704,107 + HP15_687 0.20 -0.9
704,107 + HP15_687 0.20 -0.1
704,107 + HP15_687 0.20 -0.3
704,107 + HP15_687 0.20 +0.1
704,115 - HP15_687 0.21 -0.1
704,115 - HP15_687 0.21 -0.6
704,115 - HP15_687 0.21 -0.3
704,115 - HP15_687 0.21 +1.8
704,115 - HP15_687 0.21 -1.5
704,115 - HP15_687 0.21 -0.4
704,115 - HP15_687 0.21 +0.6
704,307 + HP15_687 0.43 -0.8
704,307 + HP15_687 0.43 +0.0
704,315 - HP15_687 0.44 +3.4
704,365 + HP15_687 0.50 -1.0
704,371 - HP15_687 0.51 -0.5
704,378 + HP15_687 0.52 -0.7
704,469 + HP15_687 0.62 -1.0
704,476 - HP15_687 0.63 -0.7
704,635 - HP15_687 0.82 +1.6
704,638 + HP15_687 0.82 -2.5
704,708 - +0.2
705,137 - +0.8
705,159 - -0.7
705,362 - HP15_688 0.66 -2.0

Or see this region's nucleotide sequence