Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_674 and HP15_675 are separated by 117 nucleotides HP15_675 and HP15_676 are separated by 11 nucleotides HP15_676 and HP15_677 are separated by 3 nucleotides HP15_677 and HP15_678 are separated by 91 nucleotides HP15_678 and HP15_679 are separated by 9 nucleotides
HP15_674: HP15_674 - phage-related packaging protein, at 694,636 to 695,154
_674
HP15_675: HP15_675 - conserved hypothetical protein, at 695,272 to 695,703
_675
HP15_676: HP15_676 - N-acetylmuramoyl-L-alanine amidase, at 695,715 to 696,140
_676
HP15_677: HP15_677 - hypothetical protein, at 696,144 to 696,452
_677
HP15_678: HP15_678 - conserved hypothetical protein, at 696,544 to 697,077
_678
HP15_679: HP15_679 - conserved hypothetical protein, at 697,087 to 697,344
_679
Position (kb) 695
696
697 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 694.728 kb on - strand, within HP15_674 at 694.730 kb on + strand, within HP15_674 at 694.745 kb on + strand, within HP15_674 at 694.749 kb on - strand, within HP15_674 at 694.826 kb on + strand, within HP15_674 at 694.834 kb on - strand, within HP15_674 at 694.961 kb on + strand, within HP15_674 at 695.043 kb on - strand, within HP15_674 at 695.123 kb on - strand at 695.128 kb on - strand at 695.143 kb on - strand at 695.167 kb on - strand at 695.227 kb on + strand at 695.233 kb on + strand at 695.233 kb on - strand at 695.250 kb on - strand at 695.271 kb on + strand at 695.320 kb on - strand, within HP15_675 at 695.322 kb on + strand, within HP15_675 at 695.426 kb on - strand, within HP15_675 at 695.532 kb on + strand, within HP15_675 at 695.537 kb on + strand, within HP15_675 at 695.571 kb on - strand, within HP15_675 at 695.603 kb on + strand, within HP15_675 at 695.609 kb on + strand, within HP15_675 at 695.617 kb on - strand, within HP15_675 at 695.659 kb on - strand, within HP15_675 at 695.710 kb on + strand at 695.766 kb on - strand, within HP15_676 at 695.801 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.860 kb on + strand, within HP15_676 at 695.914 kb on - strand, within HP15_676 at 695.957 kb on + strand, within HP15_676 at 695.957 kb on - strand, within HP15_676 at 696.085 kb on + strand, within HP15_676 at 696.092 kb on + strand, within HP15_676 at 696.235 kb on + strand, within HP15_677 at 696.292 kb on - strand, within HP15_677 at 696.311 kb on - strand, within HP15_677 at 696.322 kb on - strand, within HP15_677 at 696.412 kb on - strand, within HP15_677 at 696.419 kb on - strand, within HP15_677 at 696.501 kb on + strand at 696.520 kb on - strand at 696.549 kb on + strand at 696.549 kb on + strand at 696.557 kb on - strand at 696.635 kb on + strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.641 kb on - strand, within HP15_678 at 696.736 kb on - strand, within HP15_678 at 696.784 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.789 kb on + strand, within HP15_678 at 696.797 kb on - strand, within HP15_678 at 696.914 kb on + strand, within HP15_678 at 696.935 kb on + strand, within HP15_678 at 696.994 kb on + strand, within HP15_678 at 697.021 kb on - strand, within HP15_678 at 697.022 kb on + strand, within HP15_678 at 697.084 kb on + strand at 697.092 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 694,728 - HP15_674 0.18 -0.7 694,730 + HP15_674 0.18 -0.4 694,745 + HP15_674 0.21 +1.1 694,749 - HP15_674 0.22 -0.1 694,826 + HP15_674 0.37 +1.6 694,834 - HP15_674 0.38 -1.4 694,961 + HP15_674 0.63 +0.3 695,043 - HP15_674 0.78 +0.3 695,123 - +2.6 695,128 - -2.2 695,143 - -0.3 695,167 - -2.7 695,227 + -0.1 695,233 + +0.9 695,233 - -1.6 695,250 - -3.3 695,271 + -0.3 695,320 - HP15_675 0.11 -1.5 695,322 + HP15_675 0.12 -0.9 695,426 - HP15_675 0.36 -1.9 695,532 + HP15_675 0.60 +1.0 695,537 + HP15_675 0.61 -1.9 695,571 - HP15_675 0.69 -2.0 695,603 + HP15_675 0.77 -1.4 695,609 + HP15_675 0.78 -0.6 695,617 - HP15_675 0.80 -2.3 695,659 - HP15_675 0.90 +1.8 695,710 + +0.0 695,766 - HP15_676 0.12 -1.7 695,801 + HP15_676 0.20 -0.8 695,860 + HP15_676 0.34 -0.4 695,860 + HP15_676 0.34 -0.1 695,914 - HP15_676 0.47 -1.2 695,957 + HP15_676 0.57 +0.1 695,957 - HP15_676 0.57 -1.8 696,085 + HP15_676 0.87 +0.4 696,092 + HP15_676 0.88 -1.2 696,235 + HP15_677 0.29 +0.5 696,292 - HP15_677 0.48 -2.8 696,311 - HP15_677 0.54 -0.8 696,322 - HP15_677 0.58 -3.5 696,412 - HP15_677 0.87 -2.5 696,419 - HP15_677 0.89 +1.6 696,501 + -1.4 696,520 - -0.2 696,549 + -1.0 696,549 + +1.4 696,557 - -0.7 696,635 + HP15_678 0.17 -0.6 696,641 - HP15_678 0.18 -1.2 696,641 - HP15_678 0.18 +0.0 696,641 - HP15_678 0.18 +1.2 696,736 - HP15_678 0.36 -0.1 696,784 + HP15_678 0.45 -2.2 696,789 + HP15_678 0.46 -0.4 696,789 + HP15_678 0.46 -1.7 696,789 + HP15_678 0.46 +0.7 696,797 - HP15_678 0.47 -2.2 696,914 + HP15_678 0.69 -0.1 696,935 + HP15_678 0.73 +0.3 696,994 + HP15_678 0.84 +0.6 697,021 - HP15_678 0.89 -1.7 697,022 + HP15_678 0.90 -1.0 697,084 + +0.9 697,092 - +0.9
Or see this region's nucleotide sequence