Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_654 and HP15_655 are separated by 90 nucleotides HP15_655 and HP15_656 are separated by 28 nucleotides HP15_656 and HP15_657 are separated by 9 nucleotides HP15_657 and HP15_658 overlap by 4 nucleotides
HP15_654: HP15_654 - major tail sheath protein, at 675,391 to 676,908
_654
HP15_655: HP15_655 - phage tail collar domain protein-like protein, at 676,999 to 677,463
_655
HP15_656: HP15_656 - tail fiber assembly protein-like protein, at 677,492 to 677,773
_656
HP15_657: HP15_657 - phage tail fiber protein, at 677,783 to 679,219
_657
HP15_658: HP15_658 - secreted protein-putative xanthan lyase, at 679,216 to 681,789
_658
Position (kb) 677
678
679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 676.881 kb on + strand at 676.881 kb on + strand at 676.889 kb on - strand at 676.889 kb on - strand at 676.935 kb on - strand at 677.150 kb on - strand, within HP15_655 at 677.249 kb on - strand, within HP15_655 at 677.249 kb on - strand, within HP15_655 at 677.326 kb on - strand, within HP15_655 at 677.405 kb on - strand, within HP15_655 at 677.434 kb on - strand at 677.439 kb on - strand at 677.498 kb on - strand at 677.545 kb on - strand, within HP15_656 at 677.582 kb on - strand, within HP15_656 at 677.582 kb on - strand, within HP15_656 at 677.733 kb on + strand, within HP15_656 at 677.736 kb on - strand, within HP15_656 at 677.793 kb on + strand at 677.793 kb on + strand at 677.865 kb on - strand at 678.000 kb on + strand, within HP15_657 at 678.040 kb on - strand, within HP15_657 at 678.052 kb on - strand, within HP15_657 at 678.092 kb on + strand, within HP15_657 at 678.130 kb on - strand, within HP15_657 at 678.130 kb on - strand, within HP15_657 at 678.146 kb on - strand, within HP15_657 at 678.201 kb on + strand, within HP15_657 at 678.273 kb on - strand, within HP15_657 at 678.319 kb on - strand, within HP15_657 at 678.333 kb on - strand, within HP15_657 at 678.409 kb on + strand, within HP15_657 at 678.409 kb on - strand, within HP15_657 at 678.466 kb on + strand, within HP15_657 at 678.479 kb on - strand, within HP15_657 at 678.500 kb on + strand, within HP15_657 at 678.505 kb on + strand, within HP15_657 at 678.515 kb on + strand, within HP15_657 at 678.560 kb on - strand, within HP15_657 at 678.624 kb on + strand, within HP15_657 at 678.624 kb on + strand, within HP15_657 at 678.664 kb on + strand, within HP15_657 at 678.664 kb on + strand, within HP15_657 at 678.779 kb on - strand, within HP15_657 at 678.826 kb on + strand, within HP15_657 at 678.853 kb on + strand, within HP15_657 at 678.900 kb on - strand, within HP15_657 at 678.964 kb on + strand, within HP15_657 at 678.995 kb on - strand, within HP15_657 at 679.085 kb on + strand at 679.107 kb on - strand at 679.233 kb on + strand at 679.244 kb on + strand at 679.312 kb on + strand at 679.463 kb on + strand at 679.619 kb on - strand, within HP15_658 at 679.798 kb on - strand, within HP15_658 at 679.825 kb on + strand, within HP15_658 at 679.833 kb on - strand, within HP15_658 at 679.833 kb on - strand, within HP15_658 at 679.833 kb on - strand, within HP15_658 at 679.925 kb on + strand, within HP15_658 at 679.942 kb on + strand, within HP15_658 at 679.942 kb on + strand, within HP15_658 at 679.950 kb on - strand, within HP15_658 at 679.950 kb on - strand, within HP15_658 at 679.965 kb on - strand, within HP15_658 at 680.160 kb on - strand, within HP15_658 at 680.160 kb on - strand, within HP15_658 at 680.166 kb on - strand, within HP15_658 at 680.199 kb on + strand, within HP15_658 at 680.199 kb on + strand, within HP15_658 at 680.199 kb on + strand, within HP15_658 at 680.207 kb on - strand, within HP15_658
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 676,881 + -1.3 676,881 + -0.9 676,889 - -0.8 676,889 - -0.8 676,935 - -1.3 677,150 - HP15_655 0.32 +0.5 677,249 - HP15_655 0.54 -2.1 677,249 - HP15_655 0.54 -0.6 677,326 - HP15_655 0.70 +0.1 677,405 - HP15_655 0.87 -0.3 677,434 - +2.2 677,439 - +0.6 677,498 - -0.4 677,545 - HP15_656 0.19 -1.4 677,582 - HP15_656 0.32 -0.4 677,582 - HP15_656 0.32 +0.2 677,733 + HP15_656 0.85 -0.7 677,736 - HP15_656 0.87 -0.8 677,793 + -0.6 677,793 + -1.4 677,865 - -1.8 678,000 + HP15_657 0.15 -0.9 678,040 - HP15_657 0.18 +1.3 678,052 - HP15_657 0.19 -1.1 678,092 + HP15_657 0.22 -0.4 678,130 - HP15_657 0.24 -1.6 678,130 - HP15_657 0.24 -2.6 678,146 - HP15_657 0.25 +1.4 678,201 + HP15_657 0.29 -1.1 678,273 - HP15_657 0.34 -0.1 678,319 - HP15_657 0.37 -2.3 678,333 - HP15_657 0.38 +0.4 678,409 + HP15_657 0.44 -1.4 678,409 - HP15_657 0.44 +0.4 678,466 + HP15_657 0.48 +1.3 678,479 - HP15_657 0.48 -0.5 678,500 + HP15_657 0.50 -1.7 678,505 + HP15_657 0.50 -1.8 678,515 + HP15_657 0.51 +1.9 678,560 - HP15_657 0.54 +0.2 678,624 + HP15_657 0.59 -1.3 678,624 + HP15_657 0.59 +0.0 678,664 + HP15_657 0.61 -0.2 678,664 + HP15_657 0.61 -0.7 678,779 - HP15_657 0.69 -0.8 678,826 + HP15_657 0.73 -0.9 678,853 + HP15_657 0.74 +1.5 678,900 - HP15_657 0.78 -3.2 678,964 + HP15_657 0.82 -0.4 678,995 - HP15_657 0.84 -0.4 679,085 + -0.0 679,107 - +1.5 679,233 + +0.0 679,244 + +0.1 679,312 + -1.5 679,463 + +0.1 679,619 - HP15_658 0.16 +0.5 679,798 - HP15_658 0.23 -1.2 679,825 + HP15_658 0.24 -1.1 679,833 - HP15_658 0.24 -0.7 679,833 - HP15_658 0.24 +1.3 679,833 - HP15_658 0.24 +2.3 679,925 + HP15_658 0.28 -0.1 679,942 + HP15_658 0.28 +1.3 679,942 + HP15_658 0.28 -0.7 679,950 - HP15_658 0.29 -0.1 679,950 - HP15_658 0.29 -3.3 679,965 - HP15_658 0.29 -1.7 680,160 - HP15_658 0.37 +1.8 680,160 - HP15_658 0.37 +0.9 680,166 - HP15_658 0.37 -0.7 680,199 + HP15_658 0.38 +0.3 680,199 + HP15_658 0.38 -0.9 680,199 + HP15_658 0.38 +0.6 680,207 - HP15_658 0.39 +0.3
Or see this region's nucleotide sequence