Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_66 and HP15_67 are separated by 333 nucleotides HP15_67 and HP15_68 are separated by 215 nucleotides
HP15_66: HP15_66 - adenylate cyclase, at 70,790 to 72,199
_66
HP15_67: HP15_67 - short-chain dehydrogenase/reductase SDR, at 72,533 to 72,934
_67
HP15_68: HP15_68 - sensory box/FOG: EAL domain/GGDEF domain containing protein, at 73,150 to 76,638
_68
Position (kb) 72
73 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 71.561 kb on - strand, within HP15_66 at 71.561 kb on - strand, within HP15_66 at 71.709 kb on - strand, within HP15_66 at 71.715 kb on + strand, within HP15_66 at 71.720 kb on + strand, within HP15_66 at 71.728 kb on - strand, within HP15_66 at 71.736 kb on + strand, within HP15_66 at 71.888 kb on - strand, within HP15_66 at 71.907 kb on + strand, within HP15_66 at 71.907 kb on + strand, within HP15_66 at 72.087 kb on - strand at 72.094 kb on - strand at 72.167 kb on + strand at 72.167 kb on + strand at 72.284 kb on + strand at 72.292 kb on - strand at 72.292 kb on - strand at 72.413 kb on + strand at 72.555 kb on - strand at 72.584 kb on - strand, within HP15_67 at 72.598 kb on + strand, within HP15_67 at 72.636 kb on - strand, within HP15_67 at 72.636 kb on - strand, within HP15_67 at 72.638 kb on + strand, within HP15_67 at 72.643 kb on + strand, within HP15_67 at 72.643 kb on + strand, within HP15_67 at 72.649 kb on - strand, within HP15_67 at 72.665 kb on + strand, within HP15_67 at 72.673 kb on - strand, within HP15_67 at 72.739 kb on + strand, within HP15_67 at 73.065 kb on - strand at 73.084 kb on + strand at 73.107 kb on + strand at 73.115 kb on - strand at 73.156 kb on + strand at 73.306 kb on - strand at 73.331 kb on + strand at 73.339 kb on - strand at 73.396 kb on + strand at 73.414 kb on - strand at 73.444 kb on - strand at 73.496 kb on - strand at 73.511 kb on + strand, within HP15_68 at 73.569 kb on + strand, within HP15_68 at 73.577 kb on - strand, within HP15_68 at 73.579 kb on + strand, within HP15_68 at 73.579 kb on - strand, within HP15_68 at 73.623 kb on + strand, within HP15_68 at 73.648 kb on + strand, within HP15_68 at 73.726 kb on - strand, within HP15_68 at 73.761 kb on - strand, within HP15_68 at 73.802 kb on + strand, within HP15_68 at 73.832 kb on + strand, within HP15_68 at 73.841 kb on - strand, within HP15_68 at 73.874 kb on + strand, within HP15_68 at 73.887 kb on - strand, within HP15_68 at 73.906 kb on - strand, within HP15_68 at 73.912 kb on - strand, within HP15_68 at 73.924 kb on - strand, within HP15_68
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 71,561 - HP15_66 0.55 +0.6 71,561 - HP15_66 0.55 +0.5 71,709 - HP15_66 0.65 +0.6 71,715 + HP15_66 0.66 -0.8 71,720 + HP15_66 0.66 -1.9 71,728 - HP15_66 0.67 -2.1 71,736 + HP15_66 0.67 -0.1 71,888 - HP15_66 0.78 +2.0 71,907 + HP15_66 0.79 +0.7 71,907 + HP15_66 0.79 -0.4 72,087 - -0.1 72,094 - -0.9 72,167 + +1.4 72,167 + -0.8 72,284 + +0.6 72,292 - -0.3 72,292 - +1.6 72,413 + +2.4 72,555 - +1.9 72,584 - HP15_67 0.13 -0.4 72,598 + HP15_67 0.16 +0.3 72,636 - HP15_67 0.26 +0.4 72,636 - HP15_67 0.26 +2.2 72,638 + HP15_67 0.26 -0.5 72,643 + HP15_67 0.27 +0.2 72,643 + HP15_67 0.27 +0.3 72,649 - HP15_67 0.29 +0.6 72,665 + HP15_67 0.33 +0.2 72,673 - HP15_67 0.35 -1.4 72,739 + HP15_67 0.51 -1.4 73,065 - -0.1 73,084 + -0.8 73,107 + -0.1 73,115 - -0.1 73,156 + -0.3 73,306 - +0.9 73,331 + -0.2 73,339 - -0.8 73,396 + -0.9 73,414 - +2.2 73,444 - +0.0 73,496 - -1.4 73,511 + HP15_68 0.10 -2.1 73,569 + HP15_68 0.12 +0.2 73,577 - HP15_68 0.12 -0.2 73,579 + HP15_68 0.12 -0.2 73,579 - HP15_68 0.12 -3.9 73,623 + HP15_68 0.14 -1.3 73,648 + HP15_68 0.14 -0.4 73,726 - HP15_68 0.17 -1.7 73,761 - HP15_68 0.18 +1.8 73,802 + HP15_68 0.19 +0.2 73,832 + HP15_68 0.20 +1.3 73,841 - HP15_68 0.20 +1.2 73,874 + HP15_68 0.21 -0.8 73,887 - HP15_68 0.21 -0.2 73,906 - HP15_68 0.22 +0.3 73,912 - HP15_68 0.22 -2.0 73,924 - HP15_68 0.22 -1.1
Or see this region's nucleotide sequence