Strain Fitness in Marinobacter adhaerens HP15 around HP15_620

Experiment: monoculture; Experiment B, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_619 and HP15_620 are separated by 115 nucleotidesHP15_620 and HP15_tRNA12 are separated by 128 nucleotidesHP15_tRNA12 and HP15_621 are separated by 146 nucleotidesHP15_621 and HP15_622 are separated by 6 nucleotides HP15_619: HP15_619 - protein belonging to uncharacterized protein family UPF0061, at 641,820 to 643,562 _619 HP15_620: HP15_620 - conserved hypothetical protein, secreted, at 643,678 to 645,561 _620 HP15_tRNA12: HP15_tRNA12 - tRNA-Leu, at 645,690 to 645,776 _tRNA12 HP15_621: HP15_621 - hypothetical protein, at 645,923 to 646,156 _621 HP15_622: HP15_622 - exoribonuclease R, at 646,163 to 648,604 _622 Position (kb) 643 644 645 646Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 642.871 kb on - strand, within HP15_619at 642.872 kb on - strand, within HP15_619at 642.879 kb on + strand, within HP15_619at 642.879 kb on + strand, within HP15_619at 642.967 kb on - strand, within HP15_619at 643.051 kb on - strand, within HP15_619at 643.115 kb on - strand, within HP15_619at 643.122 kb on - strand, within HP15_619at 643.217 kb on + strand, within HP15_619at 643.317 kb on - strand, within HP15_619at 643.317 kb on - strand, within HP15_619at 643.457 kb on + strandat 643.480 kb on + strandat 643.488 kb on - strandat 643.488 kb on - strandat 643.488 kb on - strandat 643.518 kb on - strandat 643.526 kb on - strandat 643.631 kb on + strandat 643.631 kb on + strandat 643.631 kb on + strandat 643.639 kb on - strandat 643.789 kb on - strandat 643.793 kb on - strandat 643.831 kb on + strandat 643.856 kb on - strandat 643.903 kb on + strand, within HP15_620at 643.924 kb on - strand, within HP15_620at 643.924 kb on - strand, within HP15_620at 643.928 kb on + strand, within HP15_620at 643.936 kb on - strand, within HP15_620at 643.939 kb on + strand, within HP15_620at 643.940 kb on - strand, within HP15_620at 644.017 kb on - strand, within HP15_620at 644.054 kb on + strand, within HP15_620at 644.329 kb on + strand, within HP15_620at 644.337 kb on - strand, within HP15_620at 644.338 kb on - strand, within HP15_620at 644.373 kb on - strand, within HP15_620at 644.400 kb on - strand, within HP15_620at 644.453 kb on + strand, within HP15_620at 644.461 kb on - strand, within HP15_620at 644.463 kb on + strand, within HP15_620at 644.471 kb on - strand, within HP15_620at 644.508 kb on + strand, within HP15_620at 644.510 kb on + strand, within HP15_620at 644.510 kb on + strand, within HP15_620at 644.546 kb on + strand, within HP15_620at 644.579 kb on - strand, within HP15_620at 644.620 kb on + strand, within HP15_620at 644.620 kb on + strand, within HP15_620at 644.628 kb on - strand, within HP15_620at 644.714 kb on - strand, within HP15_620at 644.750 kb on + strand, within HP15_620at 644.765 kb on - strand, within HP15_620at 644.802 kb on - strand, within HP15_620at 644.829 kb on + strand, within HP15_620at 644.868 kb on - strand, within HP15_620at 644.891 kb on + strand, within HP15_620at 644.950 kb on + strand, within HP15_620at 644.970 kb on - strand, within HP15_620at 644.972 kb on + strand, within HP15_620at 644.972 kb on + strand, within HP15_620at 644.980 kb on - strand, within HP15_620at 645.000 kb on + strand, within HP15_620at 645.036 kb on - strand, within HP15_620at 645.074 kb on + strand, within HP15_620at 645.092 kb on - strand, within HP15_620at 645.100 kb on + strand, within HP15_620at 645.101 kb on - strand, within HP15_620at 645.220 kb on + strand, within HP15_620at 645.221 kb on - strand, within HP15_620at 645.325 kb on + strand, within HP15_620at 645.333 kb on - strand, within HP15_620at 645.343 kb on - strand, within HP15_620at 645.454 kb on + strandat 645.611 kb on + strandat 645.618 kb on + strandat 645.628 kb on - strandat 645.904 kb on + strandat 645.958 kb on - strand, within HP15_621at 645.980 kb on + strand, within HP15_621at 645.982 kb on + strand, within HP15_621at 645.982 kb on + strand, within HP15_621at 645.990 kb on - strand, within HP15_621at 645.990 kb on - strand, within HP15_621at 645.990 kb on - strand, within HP15_621at 645.990 kb on - strand, within HP15_621at 645.995 kb on - strand, within HP15_621at 646.020 kb on + strand, within HP15_621at 646.191 kb on - strandat 646.195 kb on + strandat 646.300 kb on - strandat 646.359 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7
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642,871 - HP15_619 0.60 +0.3
642,872 - HP15_619 0.60 +0.3
642,879 + HP15_619 0.61 -1.6
642,879 + HP15_619 0.61 -0.0
642,967 - HP15_619 0.66 -0.1
643,051 - HP15_619 0.71 +0.6
643,115 - HP15_619 0.74 -0.1
643,122 - HP15_619 0.75 +2.0
643,217 + HP15_619 0.80 +1.5
643,317 - HP15_619 0.86 +0.1
643,317 - HP15_619 0.86 +1.9
643,457 + -0.4
643,480 + -1.4
643,488 - +1.3
643,488 - +1.0
643,488 - +2.0
643,518 - +0.2
643,526 - +2.0
643,631 + +0.1
643,631 + -0.9
643,631 + +0.6
643,639 - +0.1
643,789 - -0.3
643,793 - +1.4
643,831 + -1.1
643,856 - +0.5
643,903 + HP15_620 0.12 +1.6
643,924 - HP15_620 0.13 +0.4
643,924 - HP15_620 0.13 +2.8
643,928 + HP15_620 0.13 -1.2
643,936 - HP15_620 0.14 +0.3
643,939 + HP15_620 0.14 -0.6
643,940 - HP15_620 0.14 +0.5
644,017 - HP15_620 0.18 -0.1
644,054 + HP15_620 0.20 +1.1
644,329 + HP15_620 0.35 +1.7
644,337 - HP15_620 0.35 +2.4
644,338 - HP15_620 0.35 -0.4
644,373 - HP15_620 0.37 +0.4
644,400 - HP15_620 0.38 -0.4
644,453 + HP15_620 0.41 +1.6
644,461 - HP15_620 0.42 -0.4
644,463 + HP15_620 0.42 -1.3
644,471 - HP15_620 0.42 +1.8
644,508 + HP15_620 0.44 -1.3
644,510 + HP15_620 0.44 +0.7
644,510 + HP15_620 0.44 -1.0
644,546 + HP15_620 0.46 +1.1
644,579 - HP15_620 0.48 +0.3
644,620 + HP15_620 0.50 +1.5
644,620 + HP15_620 0.50 -0.4
644,628 - HP15_620 0.50 -0.6
644,714 - HP15_620 0.55 +1.7
644,750 + HP15_620 0.57 -0.3
644,765 - HP15_620 0.58 +1.3
644,802 - HP15_620 0.60 +1.1
644,829 + HP15_620 0.61 +0.5
644,868 - HP15_620 0.63 -1.3
644,891 + HP15_620 0.64 +2.3
644,950 + HP15_620 0.68 +0.6
644,970 - HP15_620 0.69 -0.8
644,972 + HP15_620 0.69 +0.1
644,972 + HP15_620 0.69 -0.7
644,980 - HP15_620 0.69 -1.3
645,000 + HP15_620 0.70 -0.3
645,036 - HP15_620 0.72 -1.4
645,074 + HP15_620 0.74 -0.6
645,092 - HP15_620 0.75 +2.1
645,100 + HP15_620 0.75 +1.8
645,101 - HP15_620 0.76 -1.7
645,220 + HP15_620 0.82 +0.9
645,221 - HP15_620 0.82 -1.5
645,325 + HP15_620 0.87 +0.7
645,333 - HP15_620 0.88 +0.6
645,343 - HP15_620 0.88 +2.0
645,454 + -0.9
645,611 + +1.9
645,618 + +0.5
645,628 - +1.9
645,904 + -1.3
645,958 - HP15_621 0.15 -0.5
645,980 + HP15_621 0.24 -1.1
645,982 + HP15_621 0.25 -1.1
645,982 + HP15_621 0.25 +1.3
645,990 - HP15_621 0.29 +0.6
645,990 - HP15_621 0.29 -2.3
645,990 - HP15_621 0.29 +1.2
645,990 - HP15_621 0.29 -1.9
645,995 - HP15_621 0.31 -2.2
646,020 + HP15_621 0.41 -1.5
646,191 - -2.3
646,195 + -2.9
646,300 - -4.7
646,359 + -1.3

Or see this region's nucleotide sequence