Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_616 and HP15_617 are separated by 46 nucleotides HP15_617 and HP15_618 are separated by 80 nucleotides HP15_618 and HP15_619 are separated by 82 nucleotides
HP15_616: HP15_616 - UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 638,387 to 639,781
_616
HP15_617: HP15_617 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, at 639,828 to 640,475
_617
HP15_618: HP15_618 - acyl-CoA dehydrogenase domain protein, at 640,556 to 641,737
_618
HP15_619: HP15_619 - protein belonging to uncharacterized protein family UPF0061, at 641,820 to 643,562
_619
Position (kb) 640
641
642 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 639.693 kb on + strand at 639.756 kb on - strand at 640.469 kb on + strand at 640.470 kb on + strand at 640.488 kb on - strand at 640.493 kb on + strand at 640.826 kb on + strand, within HP15_618 at 640.850 kb on + strand, within HP15_618 at 640.858 kb on - strand, within HP15_618 at 640.865 kb on - strand, within HP15_618 at 640.941 kb on - strand, within HP15_618 at 640.997 kb on + strand, within HP15_618 at 641.107 kb on + strand, within HP15_618 at 641.130 kb on + strand, within HP15_618 at 641.266 kb on - strand, within HP15_618 at 641.288 kb on + strand, within HP15_618 at 641.376 kb on + strand, within HP15_618 at 641.393 kb on - strand, within HP15_618 at 641.516 kb on - strand, within HP15_618 at 641.584 kb on - strand, within HP15_618 at 641.614 kb on - strand, within HP15_618 at 641.656 kb on + strand at 641.664 kb on - strand at 641.667 kb on + strand at 641.667 kb on + strand at 641.764 kb on + strand at 641.777 kb on - strand at 641.777 kb on - strand at 641.782 kb on - strand at 641.987 kb on + strand at 642.000 kb on - strand, within HP15_619 at 642.010 kb on + strand, within HP15_619 at 642.075 kb on - strand, within HP15_619 at 642.110 kb on + strand, within HP15_619 at 642.248 kb on + strand, within HP15_619 at 642.285 kb on - strand, within HP15_619 at 642.418 kb on + strand, within HP15_619 at 642.669 kb on - strand, within HP15_619
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 639,693 + +1.1 639,756 - +2.0 640,469 + -0.6 640,470 + -1.5 640,488 - +2.0 640,493 + +0.1 640,826 + HP15_618 0.23 +2.2 640,850 + HP15_618 0.25 -1.0 640,858 - HP15_618 0.26 +0.9 640,865 - HP15_618 0.26 -0.9 640,941 - HP15_618 0.33 -0.4 640,997 + HP15_618 0.37 -0.6 641,107 + HP15_618 0.47 +0.2 641,130 + HP15_618 0.49 -0.7 641,266 - HP15_618 0.60 -1.1 641,288 + HP15_618 0.62 +0.3 641,376 + HP15_618 0.69 +0.0 641,393 - HP15_618 0.71 +0.2 641,516 - HP15_618 0.81 -0.1 641,584 - HP15_618 0.87 +1.1 641,614 - HP15_618 0.90 +0.0 641,656 + +0.0 641,664 - -1.4 641,667 + -0.2 641,667 + -0.1 641,764 + +2.9 641,777 - -1.5 641,777 - +0.8 641,782 - +1.4 641,987 + +1.9 642,000 - HP15_619 0.10 +2.7 642,010 + HP15_619 0.11 -2.4 642,075 - HP15_619 0.15 +1.8 642,110 + HP15_619 0.17 -1.7 642,248 + HP15_619 0.25 -0.3 642,285 - HP15_619 0.27 +1.4 642,418 + HP15_619 0.34 +0.8 642,669 - HP15_619 0.49 +1.9
Or see this region's nucleotide sequence