Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_581 and HP15_582 overlap by 1 nucleotides HP15_582 and HP15_583 are separated by 55 nucleotides HP15_583 and HP15_584 are separated by 46 nucleotides HP15_584 and HP15_585 are separated by 10 nucleotides
HP15_581: HP15_581 - geranyltranstransferase, at 603,458 to 604,354
_581
HP15_582: HP15_582 - exonuclease VII, small subunit, at 604,354 to 604,608
_582
HP15_583: HP15_583 - protein containing DUF833, at 604,664 to 605,437
_583
HP15_584: HP15_584 - membrane protein containing DUF81, at 605,484 to 606,323
_584
HP15_585: HP15_585 - prolipoprotein diacylglyceryl transferase, at 606,334 to 607,122
_585
Position (kb) 604
605
606 Strain fitness (log2 ratio) -2
-1
0
1
2 at 604.225 kb on - strand, within HP15_581 at 604.369 kb on - strand at 604.509 kb on - strand, within HP15_582 at 604.651 kb on - strand at 604.651 kb on - strand at 604.829 kb on + strand, within HP15_583 at 604.912 kb on + strand, within HP15_583 at 604.920 kb on - strand, within HP15_583 at 605.013 kb on + strand, within HP15_583 at 605.090 kb on - strand, within HP15_583 at 605.114 kb on - strand, within HP15_583 at 605.132 kb on - strand, within HP15_583 at 605.134 kb on - strand, within HP15_583 at 605.163 kb on + strand, within HP15_583 at 605.238 kb on + strand, within HP15_583 at 605.246 kb on - strand, within HP15_583 at 605.246 kb on - strand, within HP15_583 at 605.336 kb on + strand, within HP15_583 at 605.439 kb on + strand at 605.439 kb on + strand at 605.439 kb on + strand at 605.447 kb on - strand at 605.447 kb on - strand at 605.447 kb on - strand at 605.484 kb on + strand at 605.486 kb on + strand at 605.571 kb on + strand, within HP15_584 at 605.728 kb on + strand, within HP15_584 at 605.762 kb on + strand, within HP15_584 at 605.769 kb on + strand, within HP15_584 at 605.774 kb on + strand, within HP15_584 at 606.013 kb on + strand, within HP15_584 at 606.013 kb on + strand, within HP15_584 at 606.065 kb on + strand, within HP15_584 at 606.113 kb on + strand, within HP15_584 at 606.119 kb on + strand, within HP15_584 at 606.129 kb on + strand, within HP15_584 at 606.229 kb on + strand, within HP15_584 at 606.229 kb on + strand, within HP15_584
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 604,225 - HP15_581 0.86 -2.6 604,369 - +1.0 604,509 - HP15_582 0.61 +0.2 604,651 - +1.7 604,651 - -0.4 604,829 + HP15_583 0.21 -0.2 604,912 + HP15_583 0.32 +1.6 604,920 - HP15_583 0.33 +1.8 605,013 + HP15_583 0.45 -1.8 605,090 - HP15_583 0.55 +0.6 605,114 - HP15_583 0.58 +2.4 605,132 - HP15_583 0.60 +1.8 605,134 - HP15_583 0.61 +1.6 605,163 + HP15_583 0.64 +1.5 605,238 + HP15_583 0.74 -1.5 605,246 - HP15_583 0.75 +2.0 605,246 - HP15_583 0.75 -0.3 605,336 + HP15_583 0.87 +0.7 605,439 + +1.7 605,439 + -0.3 605,439 + -1.6 605,447 - +2.6 605,447 - +0.1 605,447 - +1.2 605,484 + -0.1 605,486 + -2.6 605,571 + HP15_584 0.10 -1.0 605,728 + HP15_584 0.29 -0.8 605,762 + HP15_584 0.33 +0.5 605,769 + HP15_584 0.34 +0.3 605,774 + HP15_584 0.35 -0.8 606,013 + HP15_584 0.63 +0.8 606,013 + HP15_584 0.63 +1.4 606,065 + HP15_584 0.69 -1.1 606,113 + HP15_584 0.75 -1.0 606,119 + HP15_584 0.76 -1.0 606,129 + HP15_584 0.77 -0.0 606,229 + HP15_584 0.89 +1.8 606,229 + HP15_584 0.89 -2.0
Or see this region's nucleotide sequence