Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_523 and HP15_524 are separated by 56 nucleotides HP15_524 and HP15_525 are separated by 147 nucleotides
HP15_523: HP15_523 - two component, sigma54 specific, transcriptional regulator, Fis family, at 536,554 to 537,942
_523
HP15_524: HP15_524 - signal transduction histidine kinase, nitrogen specific, NtrB, at 537,999 to 539,654
_524
HP15_525: HP15_525 - NAD+ synthetase, at 539,802 to 541,418
_525
Position (kb) 537
538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.031 kb on + strand, within HP15_523 at 537.116 kb on - strand, within HP15_523 at 537.143 kb on + strand, within HP15_523 at 537.149 kb on - strand, within HP15_523 at 537.238 kb on + strand, within HP15_523 at 537.480 kb on + strand, within HP15_523 at 537.501 kb on - strand, within HP15_523 at 537.534 kb on + strand, within HP15_523 at 537.542 kb on - strand, within HP15_523 at 537.574 kb on - strand, within HP15_523 at 537.574 kb on - strand, within HP15_523 at 537.624 kb on - strand, within HP15_523 at 537.703 kb on - strand, within HP15_523 at 537.703 kb on - strand, within HP15_523 at 537.719 kb on + strand, within HP15_523 at 537.719 kb on + strand, within HP15_523 at 537.745 kb on + strand, within HP15_523 at 537.748 kb on - strand, within HP15_523 at 537.753 kb on - strand, within HP15_523 at 537.758 kb on - strand, within HP15_523 at 537.850 kb on - strand at 537.914 kb on + strand at 537.919 kb on + strand at 537.927 kb on - strand at 538.008 kb on - strand at 538.097 kb on + strand at 538.213 kb on + strand, within HP15_524 at 538.218 kb on + strand, within HP15_524 at 538.270 kb on + strand, within HP15_524 at 538.285 kb on + strand, within HP15_524 at 538.285 kb on + strand, within HP15_524 at 538.293 kb on - strand, within HP15_524 at 538.323 kb on - strand, within HP15_524 at 538.461 kb on + strand, within HP15_524 at 538.504 kb on - strand, within HP15_524 at 538.607 kb on - strand, within HP15_524 at 538.607 kb on - strand, within HP15_524 at 538.690 kb on + strand, within HP15_524 at 538.766 kb on + strand, within HP15_524 at 539.178 kb on + strand, within HP15_524 at 539.186 kb on - strand, within HP15_524 at 539.200 kb on + strand, within HP15_524 at 539.239 kb on - strand, within HP15_524 at 539.310 kb on + strand, within HP15_524 at 539.372 kb on + strand, within HP15_524 at 539.415 kb on - strand, within HP15_524 at 539.464 kb on + strand, within HP15_524 at 539.536 kb on - strand at 539.563 kb on + strand at 539.606 kb on + strand at 539.606 kb on + strand at 539.689 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 537,031 + HP15_523 0.34 +0.8 537,116 - HP15_523 0.40 +1.4 537,143 + HP15_523 0.42 -0.3 537,149 - HP15_523 0.43 -1.1 537,238 + HP15_523 0.49 -1.1 537,480 + HP15_523 0.67 -0.0 537,501 - HP15_523 0.68 +0.5 537,534 + HP15_523 0.71 -0.4 537,542 - HP15_523 0.71 -1.1 537,574 - HP15_523 0.73 -0.6 537,574 - HP15_523 0.73 -0.2 537,624 - HP15_523 0.77 +1.0 537,703 - HP15_523 0.83 -0.4 537,703 - HP15_523 0.83 +1.3 537,719 + HP15_523 0.84 +0.5 537,719 + HP15_523 0.84 -1.1 537,745 + HP15_523 0.86 +0.6 537,748 - HP15_523 0.86 -0.1 537,753 - HP15_523 0.86 -0.1 537,758 - HP15_523 0.87 +0.8 537,850 - +0.1 537,914 + -0.3 537,919 + +0.6 537,927 - -2.1 538,008 - -0.8 538,097 + +0.6 538,213 + HP15_524 0.13 +2.5 538,218 + HP15_524 0.13 -2.4 538,270 + HP15_524 0.16 -1.0 538,285 + HP15_524 0.17 -2.4 538,285 + HP15_524 0.17 +1.9 538,293 - HP15_524 0.18 -0.2 538,323 - HP15_524 0.20 -0.5 538,461 + HP15_524 0.28 -0.9 538,504 - HP15_524 0.30 -2.8 538,607 - HP15_524 0.37 +0.4 538,607 - HP15_524 0.37 -1.8 538,690 + HP15_524 0.42 -1.1 538,766 + HP15_524 0.46 -0.2 539,178 + HP15_524 0.71 -0.2 539,186 - HP15_524 0.72 -1.1 539,200 + HP15_524 0.73 -0.2 539,239 - HP15_524 0.75 +1.3 539,310 + HP15_524 0.79 -2.2 539,372 + HP15_524 0.83 +0.1 539,415 - HP15_524 0.86 -1.3 539,464 + HP15_524 0.88 +0.9 539,536 - -0.8 539,563 + -0.1 539,606 + +0.1 539,606 + -1.3 539,689 - +0.7
Or see this region's nucleotide sequence