Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_475 and HP15_476 overlap by 4 nucleotides HP15_476 and HP15_477 overlap by 4 nucleotides HP15_477 and HP15_478 are separated by 65 nucleotides
HP15_475: HP15_475 - Tfp pilus assembly protein PilN, at 486,411 to 486,977
_475
HP15_476: HP15_476 - type 4 fimbrial biogenesis protein PilO, at 486,974 to 487,585
_476
HP15_477: HP15_477 - type 4 fimbrial biogenesis protein PilP, at 487,582 to 488,136
_477
HP15_478: HP15_478 - type 4 fimbrial biogenesis protein PilQ, at 488,202 to 490,268
_478
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 486.586 kb on - strand, within HP15_475 at 486.619 kb on - strand, within HP15_475 at 486.882 kb on - strand, within HP15_475 at 486.899 kb on - strand, within HP15_475 at 487.660 kb on - strand, within HP15_477 at 487.694 kb on - strand, within HP15_477 at 487.694 kb on - strand, within HP15_477 at 487.701 kb on - strand, within HP15_477 at 487.726 kb on - strand, within HP15_477 at 487.748 kb on - strand, within HP15_477 at 487.869 kb on + strand, within HP15_477 at 487.956 kb on + strand, within HP15_477 at 487.987 kb on + strand, within HP15_477 at 488.016 kb on - strand, within HP15_477 at 488.261 kb on + strand at 488.426 kb on - strand, within HP15_478 at 488.465 kb on - strand, within HP15_478 at 488.550 kb on - strand, within HP15_478 at 488.665 kb on + strand, within HP15_478 at 488.706 kb on - strand, within HP15_478 at 488.733 kb on - strand, within HP15_478 at 488.857 kb on - strand, within HP15_478 at 488.893 kb on + strand, within HP15_478 at 488.991 kb on + strand, within HP15_478
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 486,586 - HP15_475 0.31 -0.2 486,619 - HP15_475 0.37 -0.5 486,882 - HP15_475 0.83 +1.9 486,899 - HP15_475 0.86 -1.3 487,660 - HP15_477 0.14 +0.8 487,694 - HP15_477 0.20 +1.0 487,694 - HP15_477 0.20 +0.2 487,701 - HP15_477 0.21 -0.7 487,726 - HP15_477 0.26 -0.4 487,748 - HP15_477 0.30 -1.8 487,869 + HP15_477 0.52 +1.4 487,956 + HP15_477 0.67 -0.1 487,987 + HP15_477 0.73 -0.4 488,016 - HP15_477 0.78 +1.7 488,261 + -0.4 488,426 - HP15_478 0.11 -0.5 488,465 - HP15_478 0.13 -1.3 488,550 - HP15_478 0.17 -1.2 488,665 + HP15_478 0.22 +0.0 488,706 - HP15_478 0.24 +1.7 488,733 - HP15_478 0.26 +0.9 488,857 - HP15_478 0.32 -1.0 488,893 + HP15_478 0.33 -0.1 488,991 + HP15_478 0.38 -1.3
Or see this region's nucleotide sequence