Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_464 and HP15_465 are separated by 55 nucleotides HP15_465 and HP15_466 are separated by 12 nucleotides HP15_466 and HP15_467 are separated by 90 nucleotides
HP15_464: HP15_464 - protein containing Patatin domain, at 470,549 to 471,790
_464
HP15_465: HP15_465 - heat shock protein HslVU, ATPase subunit HslU, at 471,846 to 473,174
_465
HP15_466: HP15_466 - ATP-dependent protease peptidase subunit, at 473,187 to 473,717
_466
HP15_467: HP15_467 - cell division protein, at 473,808 to 474,440
_467
Position (kb) 471
472
473
474 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 470.851 kb on - strand, within HP15_464 at 471.007 kb on + strand, within HP15_464 at 471.009 kb on + strand, within HP15_464 at 471.020 kb on - strand, within HP15_464 at 471.238 kb on - strand, within HP15_464 at 471.238 kb on - strand, within HP15_464 at 471.256 kb on + strand, within HP15_464 at 471.390 kb on + strand, within HP15_464 at 471.587 kb on + strand, within HP15_464 at 471.813 kb on - strand at 471.861 kb on + strand at 471.920 kb on + strand at 472.082 kb on + strand, within HP15_465 at 472.184 kb on + strand, within HP15_465 at 472.234 kb on + strand, within HP15_465 at 472.234 kb on + strand, within HP15_465 at 472.234 kb on + strand, within HP15_465 at 472.837 kb on + strand, within HP15_465 at 473.002 kb on - strand, within HP15_465 at 473.052 kb on + strand at 473.215 kb on - strand at 473.215 kb on - strand at 473.215 kb on - strand at 473.356 kb on + strand, within HP15_466 at 473.437 kb on + strand, within HP15_466 at 473.438 kb on + strand, within HP15_466 at 473.480 kb on - strand, within HP15_466 at 473.502 kb on - strand, within HP15_466 at 473.800 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 470,851 - HP15_464 0.24 +2.3 471,007 + HP15_464 0.37 +1.2 471,009 + HP15_464 0.37 -0.7 471,020 - HP15_464 0.38 -1.6 471,238 - HP15_464 0.55 -1.3 471,238 - HP15_464 0.55 +0.4 471,256 + HP15_464 0.57 -1.0 471,390 + HP15_464 0.68 +2.5 471,587 + HP15_464 0.84 +1.6 471,813 - -0.3 471,861 + -0.7 471,920 + -0.4 472,082 + HP15_465 0.18 +2.4 472,184 + HP15_465 0.25 -0.4 472,234 + HP15_465 0.29 -2.0 472,234 + HP15_465 0.29 +2.7 472,234 + HP15_465 0.29 -0.2 472,837 + HP15_465 0.75 +0.3 473,002 - HP15_465 0.87 +1.3 473,052 + +1.7 473,215 - +0.8 473,215 - -0.2 473,215 - +0.0 473,356 + HP15_466 0.32 +4.0 473,437 + HP15_466 0.47 -1.2 473,438 + HP15_466 0.47 +0.1 473,480 - HP15_466 0.55 -1.3 473,502 - HP15_466 0.59 +0.7 473,800 - -0.9
Or see this region's nucleotide sequence