Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_460 and HP15_461 are separated by 8 nucleotides HP15_461 and HP15_462 are separated by 482 nucleotides HP15_462 and HP15_463 are separated by 15 nucleotides
HP15_460: HP15_460 - SAM-dependent methyltransferase, at 465,530 to 466,735
_460
HP15_461: HP15_461 - Histidinol-phosphatase (EC:3.1.3.15) <small>(from data)</small>, at 466,744 to 467,400
_461
HP15_462: HP15_462 - dinucleoside polyphosphate hydrolase, at 467,883 to 468,104
_462
HP15_463: HP15_463 - fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain protein, at 468,120 to 470,426
_463
Position (kb) 466
467
468 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 465.758 kb on - strand, within HP15_460 at 465.758 kb on - strand, within HP15_460 at 465.944 kb on - strand, within HP15_460 at 465.966 kb on + strand, within HP15_460 at 465.971 kb on + strand, within HP15_460 at 466.424 kb on - strand, within HP15_460 at 466.488 kb on - strand, within HP15_460 at 466.489 kb on - strand, within HP15_460 at 466.500 kb on + strand, within HP15_460 at 466.513 kb on - strand, within HP15_460 at 467.084 kb on + strand, within HP15_461 at 467.448 kb on + strand at 467.456 kb on - strand at 467.572 kb on - strand at 467.590 kb on + strand at 467.598 kb on - strand at 467.992 kb on + strand, within HP15_462 at 468.038 kb on + strand, within HP15_462 at 468.069 kb on + strand, within HP15_462 at 468.139 kb on + strand at 468.245 kb on + strand at 468.328 kb on + strand at 468.331 kb on - strand at 468.336 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 465,758 - HP15_460 0.19 -0.1 465,758 - HP15_460 0.19 -0.2 465,944 - HP15_460 0.34 -0.7 465,966 + HP15_460 0.36 +2.3 465,971 + HP15_460 0.37 -0.0 466,424 - HP15_460 0.74 +1.6 466,488 - HP15_460 0.79 -2.3 466,489 - HP15_460 0.80 +0.4 466,500 + HP15_460 0.80 +0.1 466,513 - HP15_460 0.82 -0.4 467,084 + HP15_461 0.52 -2.2 467,448 + -0.5 467,456 - +0.5 467,572 - -1.8 467,590 + +1.9 467,598 - -3.2 467,992 + HP15_462 0.49 -0.9 468,038 + HP15_462 0.70 -1.7 468,069 + HP15_462 0.84 -0.9 468,139 + +0.4 468,245 + -2.0 468,328 + -0.9 468,331 - -3.1 468,336 - -5.1
Or see this region's nucleotide sequence