Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g120 and HP15_p187g121 are separated by 97 nucleotides HP15_p187g121 and HP15_p187g122 are separated by 39 nucleotides HP15_p187g122 and HP15_p187g123 are separated by 24 nucleotides
HP15_p187g120: HP15_p187g120 - secreted protein, at 122,018 to 123,472
_p187g120
HP15_p187g121: HP15_p187g121 - protein containing signal transduction response regulator, receiver region domains, at 123,570 to 124,238
_p187g121
HP15_p187g122: HP15_p187g122 - membrane protein, at 124,278 to 124,688
_p187g122
HP15_p187g123: HP15_p187g123 - conserved hypothetical protein, secreted, at 124,713 to 126,365
_p187g123
Position (kb) 124
125 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 123.289 kb on - strand, within HP15_p187g120 at 123.293 kb on + strand, within HP15_p187g120 at 123.303 kb on + strand, within HP15_p187g120 at 123.308 kb on - strand, within HP15_p187g120 at 123.309 kb on - strand, within HP15_p187g120 at 123.311 kb on - strand, within HP15_p187g120 at 123.311 kb on - strand, within HP15_p187g120 at 123.316 kb on - strand, within HP15_p187g120 at 123.324 kb on + strand, within HP15_p187g120 at 123.324 kb on + strand, within HP15_p187g120 at 123.330 kb on + strand at 123.338 kb on - strand at 123.364 kb on + strand at 123.364 kb on - strand at 123.387 kb on + strand at 123.387 kb on + strand at 123.387 kb on + strand at 123.395 kb on - strand at 123.467 kb on + strand at 123.475 kb on - strand at 123.475 kb on - strand at 123.536 kb on - strand at 123.577 kb on + strand at 123.579 kb on + strand at 123.587 kb on - strand at 123.587 kb on - strand at 123.638 kb on + strand, within HP15_p187g121 at 123.661 kb on + strand, within HP15_p187g121 at 123.669 kb on - strand, within HP15_p187g121 at 123.669 kb on - strand, within HP15_p187g121 at 123.687 kb on + strand, within HP15_p187g121 at 123.704 kb on - strand, within HP15_p187g121 at 123.772 kb on + strand, within HP15_p187g121 at 123.777 kb on + strand, within HP15_p187g121 at 123.777 kb on + strand, within HP15_p187g121 at 123.786 kb on - strand, within HP15_p187g121 at 123.787 kb on + strand, within HP15_p187g121 at 123.792 kb on + strand, within HP15_p187g121 at 123.795 kb on - strand, within HP15_p187g121 at 123.797 kb on + strand, within HP15_p187g121 at 123.797 kb on + strand, within HP15_p187g121 at 123.805 kb on - strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.831 kb on + strand, within HP15_p187g121 at 123.839 kb on + strand, within HP15_p187g121 at 123.839 kb on - strand, within HP15_p187g121 at 123.839 kb on - strand, within HP15_p187g121 at 123.839 kb on - strand, within HP15_p187g121 at 123.839 kb on - strand, within HP15_p187g121 at 123.839 kb on - strand, within HP15_p187g121 at 123.885 kb on - strand, within HP15_p187g121 at 123.887 kb on + strand, within HP15_p187g121 at 123.937 kb on - strand, within HP15_p187g121 at 123.971 kb on + strand, within HP15_p187g121 at 123.971 kb on + strand, within HP15_p187g121 at 123.971 kb on + strand, within HP15_p187g121 at 123.997 kb on + strand, within HP15_p187g121 at 124.057 kb on + strand, within HP15_p187g121 at 124.135 kb on - strand, within HP15_p187g121 at 124.135 kb on - strand, within HP15_p187g121 at 124.135 kb on - strand, within HP15_p187g121 at 124.250 kb on + strand at 124.254 kb on + strand at 124.261 kb on + strand at 124.283 kb on - strand at 124.302 kb on - strand at 124.302 kb on - strand at 124.408 kb on + strand, within HP15_p187g122 at 124.451 kb on + strand, within HP15_p187g122 at 124.454 kb on - strand, within HP15_p187g122 at 124.486 kb on + strand, within HP15_p187g122 at 124.487 kb on + strand, within HP15_p187g122 at 124.491 kb on + strand, within HP15_p187g122 at 124.509 kb on + strand, within HP15_p187g122 at 124.509 kb on - strand, within HP15_p187g122 at 124.543 kb on + strand, within HP15_p187g122 at 124.546 kb on - strand, within HP15_p187g122 at 124.548 kb on + strand, within HP15_p187g122 at 124.548 kb on + strand, within HP15_p187g122 at 124.556 kb on - strand, within HP15_p187g122 at 124.584 kb on + strand, within HP15_p187g122 at 124.765 kb on - strand at 124.808 kb on + strand at 124.880 kb on + strand, within HP15_p187g123 at 124.880 kb on + strand at 124.888 kb on - strand, within HP15_p187g123 at 124.888 kb on - strand, within HP15_p187g123 at 124.888 kb on - strand, within HP15_p187g123 at 124.892 kb on + strand, within HP15_p187g123 at 124.905 kb on - strand, within HP15_p187g123 at 124.915 kb on - strand, within HP15_p187g123 at 124.939 kb on - strand, within HP15_p187g123 at 124.940 kb on + strand, within HP15_p187g123 at 124.945 kb on + strand, within HP15_p187g123 at 124.945 kb on + strand, within HP15_p187g123 at 124.953 kb on - strand, within HP15_p187g123 at 125.026 kb on - strand, within HP15_p187g123 at 125.034 kb on + strand, within HP15_p187g123 at 125.042 kb on - strand, within HP15_p187g123 at 125.054 kb on + strand, within HP15_p187g123 at 125.054 kb on - strand, within HP15_p187g123 at 125.062 kb on - strand, within HP15_p187g123 at 125.062 kb on - strand, within HP15_p187g123 at 125.098 kb on + strand, within HP15_p187g123 at 125.099 kb on + strand, within HP15_p187g123 at 125.099 kb on + strand, within HP15_p187g123 at 125.101 kb on - strand, within HP15_p187g123 at 125.113 kb on + strand, within HP15_p187g123 at 125.131 kb on + strand, within HP15_p187g123 at 125.133 kb on + strand, within HP15_p187g123 at 125.133 kb on + strand, within HP15_p187g123 at 125.134 kb on - strand, within HP15_p187g123 at 125.141 kb on - strand, within HP15_p187g123 at 125.154 kb on + strand, within HP15_p187g123 at 125.185 kb on + strand, within HP15_p187g123 at 125.186 kb on + strand, within HP15_p187g123 at 125.187 kb on + strand, within HP15_p187g123 at 125.193 kb on - strand, within HP15_p187g123 at 125.193 kb on - strand, within HP15_p187g123 at 125.193 kb on - strand, within HP15_p187g123 at 125.226 kb on - strand, within HP15_p187g123 at 125.276 kb on - strand, within HP15_p187g123 at 125.289 kb on + strand, within HP15_p187g123 at 125.297 kb on - strand, within HP15_p187g123 at 125.297 kb on - strand, within HP15_p187g123 at 125.297 kb on - strand, within HP15_p187g123 at 125.297 kb on - strand, within HP15_p187g123 at 125.328 kb on + strand, within HP15_p187g123 at 125.328 kb on + strand, within HP15_p187g123 at 125.338 kb on + strand, within HP15_p187g123 at 125.344 kb on + strand, within HP15_p187g123 at 125.346 kb on - strand, within HP15_p187g123 at 125.352 kb on - strand, within HP15_p187g123 at 125.352 kb on - strand, within HP15_p187g123 at 125.359 kb on + strand, within HP15_p187g123 at 125.359 kb on + strand, within HP15_p187g123 at 125.359 kb on + strand, within HP15_p187g123 at 125.359 kb on + strand, within HP15_p187g123 at 125.367 kb on + strand, within HP15_p187g123 at 125.386 kb on - strand, within HP15_p187g123 at 125.405 kb on - strand, within HP15_p187g123 at 125.442 kb on - strand, within HP15_p187g123 at 125.473 kb on + strand, within HP15_p187g123 at 125.473 kb on + strand, within HP15_p187g123 at 125.476 kb on - strand, within HP15_p187g123 at 125.481 kb on - strand, within HP15_p187g123 at 125.503 kb on + strand, within HP15_p187g123 at 125.511 kb on - strand, within HP15_p187g123 at 125.514 kb on + strand, within HP15_p187g123 at 125.547 kb on + strand, within HP15_p187g123 at 125.547 kb on + strand, within HP15_p187g123 at 125.555 kb on - strand, within HP15_p187g123 at 125.555 kb on - strand, within HP15_p187g123 at 125.557 kb on + strand, within HP15_p187g123 at 125.557 kb on + strand, within HP15_p187g123 at 125.557 kb on + strand, within HP15_p187g123 at 125.581 kb on - strand, within HP15_p187g123 at 125.612 kb on + strand, within HP15_p187g123 at 125.621 kb on + strand, within HP15_p187g123 at 125.636 kb on + strand, within HP15_p187g123 at 125.636 kb on + strand, within HP15_p187g123 at 125.636 kb on + strand, within HP15_p187g123 at 125.636 kb on + strand, within HP15_p187g123 at 125.643 kb on + strand, within HP15_p187g123 at 125.643 kb on + strand, within HP15_p187g123 at 125.643 kb on + strand, within HP15_p187g123 at 125.643 kb on + strand, within HP15_p187g123 at 125.643 kb on + strand, within HP15_p187g123 at 125.643 kb on + strand, within HP15_p187g123 at 125.644 kb on - strand, within HP15_p187g123 at 125.644 kb on - strand, within HP15_p187g123 at 125.644 kb on - strand, within HP15_p187g123 at 125.644 kb on - strand, within HP15_p187g123 at 125.644 kb on - strand, within HP15_p187g123 at 125.644 kb on - strand, within HP15_p187g123 at 125.644 kb on - strand, within HP15_p187g123 at 125.644 kb on - strand, within HP15_p187g123 at 125.651 kb on - strand, within HP15_p187g123 at 125.651 kb on - strand, within HP15_p187g123 at 125.651 kb on - strand, within HP15_p187g123 at 125.656 kb on - strand, within HP15_p187g123 at 125.657 kb on + strand, within HP15_p187g123 at 125.664 kb on + strand, within HP15_p187g123 at 125.665 kb on - strand, within HP15_p187g123 at 125.670 kb on - strand, within HP15_p187g123 at 125.670 kb on - strand, within HP15_p187g123 at 125.673 kb on + strand, within HP15_p187g123 at 125.681 kb on - strand, within HP15_p187g123 at 125.688 kb on + strand, within HP15_p187g123
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 123,289 - HP15_p187g120 0.87 -0.6 123,293 + HP15_p187g120 0.88 -1.4 123,303 + HP15_p187g120 0.88 +2.0 123,308 - HP15_p187g120 0.89 +1.7 123,309 - HP15_p187g120 0.89 -1.7 123,311 - HP15_p187g120 0.89 +1.4 123,311 - HP15_p187g120 0.89 +0.0 123,316 - HP15_p187g120 0.89 +0.3 123,324 + HP15_p187g120 0.90 -0.3 123,324 + HP15_p187g120 0.90 +1.6 123,330 + -0.2 123,338 - +1.3 123,364 + -0.6 123,364 - -1.2 123,387 + +2.3 123,387 + -0.5 123,387 + +0.2 123,395 - +0.5 123,467 + -1.8 123,475 - +0.3 123,475 - -0.5 123,536 - +0.1 123,577 + +1.3 123,579 + +0.9 123,587 - -1.3 123,587 - -1.7 123,638 + HP15_p187g121 0.10 -1.6 123,661 + HP15_p187g121 0.14 +2.5 123,669 - HP15_p187g121 0.15 +0.4 123,669 - HP15_p187g121 0.15 +0.0 123,687 + HP15_p187g121 0.17 +0.6 123,704 - HP15_p187g121 0.20 +0.7 123,772 + HP15_p187g121 0.30 -0.0 123,777 + HP15_p187g121 0.31 -0.2 123,777 + HP15_p187g121 0.31 -0.2 123,786 - HP15_p187g121 0.32 +0.8 123,787 + HP15_p187g121 0.32 +0.8 123,792 + HP15_p187g121 0.33 -0.8 123,795 - HP15_p187g121 0.34 -0.1 123,797 + HP15_p187g121 0.34 -0.0 123,797 + HP15_p187g121 0.34 +1.2 123,805 - HP15_p187g121 0.35 -1.3 123,831 + HP15_p187g121 0.39 +0.0 123,831 + HP15_p187g121 0.39 +1.6 123,831 + HP15_p187g121 0.39 +1.8 123,831 + HP15_p187g121 0.39 -0.4 123,831 + HP15_p187g121 0.39 -1.1 123,831 + HP15_p187g121 0.39 -1.3 123,831 + HP15_p187g121 0.39 -0.2 123,839 + HP15_p187g121 0.40 -0.8 123,839 - HP15_p187g121 0.40 +0.5 123,839 - HP15_p187g121 0.40 -0.7 123,839 - HP15_p187g121 0.40 -2.0 123,839 - HP15_p187g121 0.40 -0.1 123,839 - HP15_p187g121 0.40 -0.0 123,885 - HP15_p187g121 0.47 -0.3 123,887 + HP15_p187g121 0.47 -1.0 123,937 - HP15_p187g121 0.55 +0.5 123,971 + HP15_p187g121 0.60 +1.8 123,971 + HP15_p187g121 0.60 +0.3 123,971 + HP15_p187g121 0.60 -0.5 123,997 + HP15_p187g121 0.64 -2.3 124,057 + HP15_p187g121 0.73 +0.4 124,135 - HP15_p187g121 0.84 +0.3 124,135 - HP15_p187g121 0.84 -0.6 124,135 - HP15_p187g121 0.84 +2.1 124,250 + +1.3 124,254 + -0.4 124,261 + -0.1 124,283 - -0.5 124,302 - +0.2 124,302 - +0.1 124,408 + HP15_p187g122 0.32 +2.2 124,451 + HP15_p187g122 0.42 -0.9 124,454 - HP15_p187g122 0.43 +0.4 124,486 + HP15_p187g122 0.51 +0.0 124,487 + HP15_p187g122 0.51 +0.1 124,491 + HP15_p187g122 0.52 +1.9 124,509 + HP15_p187g122 0.56 +1.4 124,509 - HP15_p187g122 0.56 +1.7 124,543 + HP15_p187g122 0.64 +1.4 124,546 - HP15_p187g122 0.65 -0.8 124,548 + HP15_p187g122 0.66 +1.6 124,548 + HP15_p187g122 0.66 -0.6 124,556 - HP15_p187g122 0.68 -0.0 124,584 + HP15_p187g122 0.74 +1.4 124,765 - -1.1 124,808 + -2.1 124,880 + HP15_p187g123 0.10 -0.2 124,880 + -0.0 124,888 - HP15_p187g123 0.11 -0.3 124,888 - HP15_p187g123 0.11 +0.3 124,888 - HP15_p187g123 0.11 -0.4 124,892 + HP15_p187g123 0.11 +0.2 124,905 - HP15_p187g123 0.12 -0.3 124,915 - HP15_p187g123 0.12 +1.5 124,939 - HP15_p187g123 0.14 -0.6 124,940 + HP15_p187g123 0.14 +0.1 124,945 + HP15_p187g123 0.14 -0.7 124,945 + HP15_p187g123 0.14 +0.0 124,953 - HP15_p187g123 0.15 -0.4 125,026 - HP15_p187g123 0.19 +1.2 125,034 + HP15_p187g123 0.19 -1.1 125,042 - HP15_p187g123 0.20 +2.2 125,054 + HP15_p187g123 0.21 -1.7 125,054 - HP15_p187g123 0.21 +1.0 125,062 - HP15_p187g123 0.21 +1.4 125,062 - HP15_p187g123 0.21 +0.9 125,098 + HP15_p187g123 0.23 +1.0 125,099 + HP15_p187g123 0.23 +1.0 125,099 + HP15_p187g123 0.23 -1.1 125,101 - HP15_p187g123 0.23 +2.5 125,113 + HP15_p187g123 0.24 -0.8 125,131 + HP15_p187g123 0.25 -3.9 125,133 + HP15_p187g123 0.25 +1.4 125,133 + HP15_p187g123 0.25 -0.7 125,134 - HP15_p187g123 0.25 -0.4 125,141 - HP15_p187g123 0.26 -0.4 125,154 + HP15_p187g123 0.27 +0.1 125,185 + HP15_p187g123 0.29 -1.0 125,186 + HP15_p187g123 0.29 -0.1 125,187 + HP15_p187g123 0.29 -0.2 125,193 - HP15_p187g123 0.29 +1.5 125,193 - HP15_p187g123 0.29 +0.8 125,193 - HP15_p187g123 0.29 +0.7 125,226 - HP15_p187g123 0.31 +0.8 125,276 - HP15_p187g123 0.34 +0.9 125,289 + HP15_p187g123 0.35 -2.0 125,297 - HP15_p187g123 0.35 +1.7 125,297 - HP15_p187g123 0.35 +1.4 125,297 - HP15_p187g123 0.35 -1.0 125,297 - HP15_p187g123 0.35 -0.7 125,328 + HP15_p187g123 0.37 +1.9 125,328 + HP15_p187g123 0.37 -3.1 125,338 + HP15_p187g123 0.38 -0.1 125,344 + HP15_p187g123 0.38 -0.5 125,346 - HP15_p187g123 0.38 +1.8 125,352 - HP15_p187g123 0.39 -0.3 125,352 - HP15_p187g123 0.39 -0.1 125,359 + HP15_p187g123 0.39 +1.5 125,359 + HP15_p187g123 0.39 -0.9 125,359 + HP15_p187g123 0.39 -2.0 125,359 + HP15_p187g123 0.39 +2.0 125,367 + HP15_p187g123 0.40 -0.7 125,386 - HP15_p187g123 0.41 -0.2 125,405 - HP15_p187g123 0.42 +1.6 125,442 - HP15_p187g123 0.44 +0.1 125,473 + HP15_p187g123 0.46 -0.9 125,473 + HP15_p187g123 0.46 +1.1 125,476 - HP15_p187g123 0.46 -0.3 125,481 - HP15_p187g123 0.46 -1.7 125,503 + HP15_p187g123 0.48 -1.8 125,511 - HP15_p187g123 0.48 +1.2 125,514 + HP15_p187g123 0.48 +1.2 125,547 + HP15_p187g123 0.50 -1.0 125,547 + HP15_p187g123 0.50 +0.7 125,555 - HP15_p187g123 0.51 -3.0 125,555 - HP15_p187g123 0.51 -0.2 125,557 + HP15_p187g123 0.51 -0.2 125,557 + HP15_p187g123 0.51 -0.1 125,557 + HP15_p187g123 0.51 -0.5 125,581 - HP15_p187g123 0.53 -2.8 125,612 + HP15_p187g123 0.54 +0.8 125,621 + HP15_p187g123 0.55 -0.1 125,636 + HP15_p187g123 0.56 -0.3 125,636 + HP15_p187g123 0.56 +0.2 125,636 + HP15_p187g123 0.56 -1.7 125,636 + HP15_p187g123 0.56 +0.5 125,643 + HP15_p187g123 0.56 -0.9 125,643 + HP15_p187g123 0.56 -1.5 125,643 + HP15_p187g123 0.56 -0.6 125,643 + HP15_p187g123 0.56 +1.6 125,643 + HP15_p187g123 0.56 -1.4 125,643 + HP15_p187g123 0.56 -1.7 125,644 - HP15_p187g123 0.56 -1.4 125,644 - HP15_p187g123 0.56 -1.1 125,644 - HP15_p187g123 0.56 -0.1 125,644 - HP15_p187g123 0.56 -0.5 125,644 - HP15_p187g123 0.56 +0.7 125,644 - HP15_p187g123 0.56 -1.6 125,644 - HP15_p187g123 0.56 +0.7 125,644 - HP15_p187g123 0.56 -0.4 125,651 - HP15_p187g123 0.57 -0.6 125,651 - HP15_p187g123 0.57 +0.0 125,651 - HP15_p187g123 0.57 +0.6 125,656 - HP15_p187g123 0.57 -1.5 125,657 + HP15_p187g123 0.57 -1.3 125,664 + HP15_p187g123 0.58 -0.6 125,665 - HP15_p187g123 0.58 +0.6 125,670 - HP15_p187g123 0.58 +0.8 125,670 - HP15_p187g123 0.58 +1.0 125,673 + HP15_p187g123 0.58 -2.3 125,681 - HP15_p187g123 0.59 +0.3 125,688 + HP15_p187g123 0.59 -0.2
Or see this region's nucleotide sequence