Strain Fitness in Marinobacter adhaerens HP15 around HP15_p187g89

Experiment: monoculture; Experiment B, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_p187g87 and HP15_p187g88 are separated by 86 nucleotidesHP15_p187g88 and HP15_p187g89 are separated by 129 nucleotidesHP15_p187g89 and HP15_p187g90 are separated by 23 nucleotidesHP15_p187g90 and HP15_p187g91 are separated by 4 nucleotides HP15_p187g87: HP15_p187g87 - signal transduction histidine kinase, at 84,154 to 85,413 _p187g87 HP15_p187g88: HP15_p187g88 - hypothetical protein, at 85,500 to 86,042 _p187g88 HP15_p187g89: HP15_p187g89 - hypothetical protein, at 86,172 to 86,300 _p187g89 HP15_p187g90: HP15_p187g90 - response regulator receiver modulated CheW protein, at 86,324 to 87,256 _p187g90 HP15_p187g91: HP15_p187g91 - protein containing chemotaxis methyl-accepting receptor, signaling, PAS fold protein, at 87,261 to 88,886 _p187g91 Position (kb) 86 87Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 85.191 kb on - strand, within HP15_p187g87at 85.195 kb on + strand, within HP15_p187g87at 85.219 kb on - strand, within HP15_p187g87at 85.230 kb on + strand, within HP15_p187g87at 85.328 kb on + strandat 85.336 kb on - strandat 85.336 kb on - strandat 85.339 kb on + strandat 85.383 kb on + strandat 85.417 kb on - strandat 85.447 kb on + strandat 85.465 kb on - strandat 85.484 kb on - strandat 85.608 kb on + strand, within HP15_p187g88at 85.618 kb on - strand, within HP15_p187g88at 85.618 kb on - strand, within HP15_p187g88at 85.642 kb on - strand, within HP15_p187g88at 85.649 kb on + strand, within HP15_p187g88at 85.649 kb on + strand, within HP15_p187g88at 85.657 kb on - strand, within HP15_p187g88at 85.657 kb on - strand, within HP15_p187g88at 85.657 kb on - strand, within HP15_p187g88at 85.669 kb on + strand, within HP15_p187g88at 85.674 kb on + strand, within HP15_p187g88at 85.674 kb on + strand, within HP15_p187g88at 85.677 kb on - strand, within HP15_p187g88at 85.684 kb on + strand, within HP15_p187g88at 85.687 kb on - strand, within HP15_p187g88at 85.701 kb on + strand, within HP15_p187g88at 85.706 kb on + strand, within HP15_p187g88at 85.731 kb on + strand, within HP15_p187g88at 85.774 kb on + strand, within HP15_p187g88at 85.791 kb on - strand, within HP15_p187g88at 85.793 kb on - strand, within HP15_p187g88at 85.803 kb on - strand, within HP15_p187g88at 85.860 kb on + strand, within HP15_p187g88at 85.874 kb on - strand, within HP15_p187g88at 85.896 kb on - strand, within HP15_p187g88at 85.896 kb on - strand, within HP15_p187g88at 85.965 kb on + strand, within HP15_p187g88at 86.063 kb on + strandat 86.077 kb on - strandat 86.106 kb on - strandat 86.111 kb on - strandat 86.195 kb on - strand, within HP15_p187g89at 86.215 kb on - strand, within HP15_p187g89at 86.243 kb on - strand, within HP15_p187g89at 86.253 kb on - strand, within HP15_p187g89at 86.308 kb on + strandat 86.387 kb on - strandat 86.387 kb on - strandat 86.387 kb on - strandat 86.387 kb on - strandat 86.438 kb on - strand, within HP15_p187g90at 86.443 kb on - strand, within HP15_p187g90at 86.472 kb on + strand, within HP15_p187g90at 86.475 kb on - strand, within HP15_p187g90at 86.482 kb on + strand, within HP15_p187g90at 86.482 kb on + strand, within HP15_p187g90at 86.490 kb on - strand, within HP15_p187g90at 86.491 kb on + strand, within HP15_p187g90at 86.499 kb on - strand, within HP15_p187g90at 86.512 kb on + strand, within HP15_p187g90at 86.519 kb on - strand, within HP15_p187g90at 86.547 kb on + strand, within HP15_p187g90at 86.582 kb on + strand, within HP15_p187g90at 86.590 kb on - strand, within HP15_p187g90at 86.599 kb on - strand, within HP15_p187g90at 86.662 kb on + strand, within HP15_p187g90at 86.689 kb on + strand, within HP15_p187g90at 86.694 kb on + strand, within HP15_p187g90at 86.702 kb on - strand, within HP15_p187g90at 86.702 kb on - strand, within HP15_p187g90at 86.761 kb on + strand, within HP15_p187g90at 86.776 kb on - strand, within HP15_p187g90at 86.787 kb on + strand, within HP15_p187g90at 86.833 kb on + strand, within HP15_p187g90at 86.951 kb on + strand, within HP15_p187g90at 86.951 kb on + strand, within HP15_p187g90at 86.959 kb on - strand, within HP15_p187g90at 86.959 kb on - strand, within HP15_p187g90at 87.051 kb on + strand, within HP15_p187g90at 87.057 kb on - strand, within HP15_p187g90at 87.112 kb on + strand, within HP15_p187g90at 87.112 kb on + strand, within HP15_p187g90at 87.112 kb on + strand, within HP15_p187g90at 87.112 kb on + strand, within HP15_p187g90at 87.122 kb on + strand, within HP15_p187g90at 87.155 kb on + strand, within HP15_p187g90at 87.174 kb on - strandat 87.229 kb on + strandat 87.237 kb on - strandat 87.237 kb on - strandat 87.269 kb on + strandat 87.279 kb on + strandat 87.286 kb on + strandat 87.286 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7
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85,191 - HP15_p187g87 0.82 -0.6
85,195 + HP15_p187g87 0.83 -1.7
85,219 - HP15_p187g87 0.85 -0.4
85,230 + HP15_p187g87 0.85 +1.7
85,328 + +0.9
85,336 - -0.4
85,336 - -1.3
85,339 + -1.3
85,383 + +0.2
85,417 - +1.6
85,447 + +2.0
85,465 - -0.2
85,484 - +1.6
85,608 + HP15_p187g88 0.20 -1.4
85,618 - HP15_p187g88 0.22 +0.5
85,618 - HP15_p187g88 0.22 +1.3
85,642 - HP15_p187g88 0.26 +0.9
85,649 + HP15_p187g88 0.27 -0.6
85,649 + HP15_p187g88 0.27 +1.6
85,657 - HP15_p187g88 0.29 -0.0
85,657 - HP15_p187g88 0.29 +1.3
85,657 - HP15_p187g88 0.29 +0.7
85,669 + HP15_p187g88 0.31 +1.6
85,674 + HP15_p187g88 0.32 +0.7
85,674 + HP15_p187g88 0.32 +1.4
85,677 - HP15_p187g88 0.33 -0.4
85,684 + HP15_p187g88 0.34 +0.7
85,687 - HP15_p187g88 0.34 +0.1
85,701 + HP15_p187g88 0.37 -0.4
85,706 + HP15_p187g88 0.38 +1.4
85,731 + HP15_p187g88 0.43 -0.3
85,774 + HP15_p187g88 0.50 +0.3
85,791 - HP15_p187g88 0.54 +0.5
85,793 - HP15_p187g88 0.54 +0.2
85,803 - HP15_p187g88 0.56 +0.4
85,860 + HP15_p187g88 0.66 +1.2
85,874 - HP15_p187g88 0.69 +2.0
85,896 - HP15_p187g88 0.73 -2.4
85,896 - HP15_p187g88 0.73 -0.0
85,965 + HP15_p187g88 0.86 +0.1
86,063 + -0.7
86,077 - -0.0
86,106 - +0.7
86,111 - +1.5
86,195 - HP15_p187g89 0.18 +1.1
86,215 - HP15_p187g89 0.33 -0.3
86,243 - HP15_p187g89 0.55 -0.2
86,253 - HP15_p187g89 0.63 -0.8
86,308 + +1.4
86,387 - -0.2
86,387 - +0.2
86,387 - -0.5
86,387 - +1.4
86,438 - HP15_p187g90 0.12 -0.7
86,443 - HP15_p187g90 0.13 -1.9
86,472 + HP15_p187g90 0.16 -0.8
86,475 - HP15_p187g90 0.16 +0.9
86,482 + HP15_p187g90 0.17 +0.9
86,482 + HP15_p187g90 0.17 -0.5
86,490 - HP15_p187g90 0.18 +0.1
86,491 + HP15_p187g90 0.18 -0.3
86,499 - HP15_p187g90 0.19 +0.4
86,512 + HP15_p187g90 0.20 -0.3
86,519 - HP15_p187g90 0.21 -0.1
86,547 + HP15_p187g90 0.24 +1.4
86,582 + HP15_p187g90 0.28 -0.9
86,590 - HP15_p187g90 0.29 -0.0
86,599 - HP15_p187g90 0.29 +1.5
86,662 + HP15_p187g90 0.36 -0.3
86,689 + HP15_p187g90 0.39 -0.0
86,694 + HP15_p187g90 0.40 -0.6
86,702 - HP15_p187g90 0.41 -0.3
86,702 - HP15_p187g90 0.41 +1.2
86,761 + HP15_p187g90 0.47 -1.3
86,776 - HP15_p187g90 0.48 +0.0
86,787 + HP15_p187g90 0.50 -0.3
86,833 + HP15_p187g90 0.55 -2.2
86,951 + HP15_p187g90 0.67 +0.2
86,951 + HP15_p187g90 0.67 -3.5
86,959 - HP15_p187g90 0.68 +0.6
86,959 - HP15_p187g90 0.68 -1.2
87,051 + HP15_p187g90 0.78 -0.6
87,057 - HP15_p187g90 0.79 +1.2
87,112 + HP15_p187g90 0.84 -0.5
87,112 + HP15_p187g90 0.84 -0.8
87,112 + HP15_p187g90 0.84 +2.2
87,112 + HP15_p187g90 0.84 -0.0
87,122 + HP15_p187g90 0.86 -0.5
87,155 + HP15_p187g90 0.89 +0.8
87,174 - +0.5
87,229 + +0.5
87,237 - +2.1
87,237 - -1.9
87,269 + +0.7
87,279 + -0.0
87,286 + -0.2
87,286 + -0.8

Or see this region's nucleotide sequence