Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4100 and HP15_4101 are separated by 11 nucleotides HP15_4101 and HP15_4102 are separated by 94 nucleotides HP15_4102 and HP15_4103 are separated by 94 nucleotides HP15_4103 and HP15_4104 are separated by 40 nucleotides
HP15_4100: HP15_4100 - long-chain-fatty-acid-CoA ligase, at 4,334,273 to 4,336,084
_4100
HP15_4101: HP15_4101 - membrane protein, at 4,336,096 to 4,336,416
_4101
HP15_4102: HP15_4102 - conserved hypothetical protein, at 4,336,511 to 4,337,497
_4102
HP15_4103: HP15_4103 - conserved hypothetical protein, at 4,337,592 to 4,338,239
_4103
HP15_4104: HP15_4104 - conserved hypothetical protein, at 4,338,280 to 4,338,672
_4104
Position (kb)
4336
4337
4338 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4335.687 kb on - strand, within HP15_4100 at 4335.687 kb on - strand, within HP15_4100 at 4335.738 kb on + strand, within HP15_4100 at 4335.810 kb on - strand, within HP15_4100 at 4335.834 kb on - strand, within HP15_4100 at 4335.839 kb on + strand, within HP15_4100 at 4335.922 kb on - strand at 4335.983 kb on + strand at 4336.013 kb on - strand at 4336.159 kb on - strand, within HP15_4101 at 4336.159 kb on - strand, within HP15_4101 at 4336.159 kb on - strand, within HP15_4101 at 4336.159 kb on - strand, within HP15_4101 at 4336.159 kb on - strand, within HP15_4101 at 4336.159 kb on - strand, within HP15_4101 at 4336.311 kb on - strand, within HP15_4101 at 4336.361 kb on + strand, within HP15_4101 at 4336.445 kb on - strand at 4336.494 kb on + strand at 4336.523 kb on + strand at 4336.523 kb on + strand at 4336.531 kb on - strand at 4336.619 kb on + strand, within HP15_4102 at 4336.655 kb on - strand, within HP15_4102 at 4336.675 kb on - strand, within HP15_4102 at 4336.781 kb on - strand, within HP15_4102 at 4336.870 kb on - strand, within HP15_4102 at 4336.886 kb on + strand, within HP15_4102 at 4337.023 kb on - strand, within HP15_4102 at 4337.055 kb on - strand, within HP15_4102 at 4337.071 kb on - strand, within HP15_4102 at 4337.110 kb on - strand, within HP15_4102 at 4337.113 kb on + strand, within HP15_4102 at 4337.138 kb on + strand, within HP15_4102 at 4337.222 kb on - strand, within HP15_4102 at 4337.310 kb on - strand, within HP15_4102 at 4337.315 kb on - strand, within HP15_4102 at 4337.315 kb on - strand, within HP15_4102 at 4337.391 kb on + strand, within HP15_4102 at 4337.406 kb on - strand at 4337.425 kb on - strand at 4337.430 kb on - strand at 4337.546 kb on + strand at 4337.554 kb on - strand at 4337.633 kb on + strand at 4337.651 kb on - strand at 4337.748 kb on + strand, within HP15_4103 at 4337.793 kb on + strand, within HP15_4103 at 4337.801 kb on - strand, within HP15_4103 at 4338.061 kb on + strand, within HP15_4103 at 4338.069 kb on - strand, within HP15_4103 at 4338.101 kb on + strand, within HP15_4103 at 4338.126 kb on - strand, within HP15_4103 at 4338.146 kb on - strand, within HP15_4103 at 4338.146 kb on - strand, within HP15_4103 at 4338.160 kb on + strand, within HP15_4103 at 4338.224 kb on - strand at 4338.248 kb on - strand at 4338.258 kb on - strand at 4338.258 kb on - strand at 4338.432 kb on - strand, within HP15_4104 at 4338.447 kb on - strand, within HP15_4104
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 4,335,687 - HP15_4100 0.78 +0.1 4,335,687 - HP15_4100 0.78 +1.6 4,335,738 + HP15_4100 0.81 -1.5 4,335,810 - HP15_4100 0.85 -0.5 4,335,834 - HP15_4100 0.86 +1.6 4,335,839 + HP15_4100 0.86 -0.6 4,335,922 - -0.6 4,335,983 + -0.5 4,336,013 - +0.4 4,336,159 - HP15_4101 0.20 -0.8 4,336,159 - HP15_4101 0.20 -1.0 4,336,159 - HP15_4101 0.20 -0.3 4,336,159 - HP15_4101 0.20 +1.4 4,336,159 - HP15_4101 0.20 -0.6 4,336,159 - HP15_4101 0.20 +0.2 4,336,311 - HP15_4101 0.67 -0.5 4,336,361 + HP15_4101 0.83 +0.0 4,336,445 - +0.2 4,336,494 + +0.1 4,336,523 + -2.5 4,336,523 + -0.7 4,336,531 - -0.5 4,336,619 + HP15_4102 0.11 -0.3 4,336,655 - HP15_4102 0.15 +0.1 4,336,675 - HP15_4102 0.17 -1.9 4,336,781 - HP15_4102 0.27 +0.1 4,336,870 - HP15_4102 0.36 -1.0 4,336,886 + HP15_4102 0.38 +2.4 4,337,023 - HP15_4102 0.52 -1.1 4,337,055 - HP15_4102 0.55 -0.7 4,337,071 - HP15_4102 0.57 -1.0 4,337,110 - HP15_4102 0.61 -1.2 4,337,113 + HP15_4102 0.61 +0.8 4,337,138 + HP15_4102 0.64 -0.8 4,337,222 - HP15_4102 0.72 +1.7 4,337,310 - HP15_4102 0.81 +0.3 4,337,315 - HP15_4102 0.81 -0.1 4,337,315 - HP15_4102 0.81 +0.5 4,337,391 + HP15_4102 0.89 -1.4 4,337,406 - +1.5 4,337,425 - +1.0 4,337,430 - +1.9 4,337,546 + -0.1 4,337,554 - -1.1 4,337,633 + +0.6 4,337,651 - +0.5 4,337,748 + HP15_4103 0.24 -1.3 4,337,793 + HP15_4103 0.31 +0.3 4,337,801 - HP15_4103 0.32 -0.2 4,338,061 + HP15_4103 0.72 -1.2 4,338,069 - HP15_4103 0.74 +1.2 4,338,101 + HP15_4103 0.79 -0.5 4,338,126 - HP15_4103 0.82 -0.4 4,338,146 - HP15_4103 0.85 -1.6 4,338,146 - HP15_4103 0.85 +0.6 4,338,160 + HP15_4103 0.88 -2.2 4,338,224 - +0.6 4,338,248 - +1.3 4,338,258 - -0.6 4,338,258 - +0.5 4,338,432 - HP15_4104 0.39 +0.0 4,338,447 - HP15_4104 0.42 -0.0
Or see this region's nucleotide sequence