Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3732 and HP15_3733 are separated by 59 nucleotides HP15_3733 and HP15_3734 overlap by 4 nucleotides HP15_3734 and HP15_3735 are separated by 45 nucleotides
HP15_3732: HP15_3732 - metallo-beta-lactamase family protein, at 3,954,097 to 3,955,005
_3732
HP15_3733: HP15_3733 - hypothetical protein, at 3,955,065 to 3,955,175
_3733
HP15_3734: HP15_3734 - conserved hypothetical protein, secreted, at 3,955,172 to 3,955,615
_3734
HP15_3735: HP15_3735 - rhodanese domain protein-like protein, at 3,955,661 to 3,956,224
_3735
Position (kb)
3955
3956 Strain fitness (log2 ratio)
-1
0
1
2 at 3954.221 kb on - strand, within HP15_3732 at 3954.280 kb on + strand, within HP15_3732 at 3954.342 kb on + strand, within HP15_3732 at 3954.375 kb on - strand, within HP15_3732 at 3954.375 kb on - strand, within HP15_3732 at 3954.382 kb on - strand, within HP15_3732 at 3954.387 kb on + strand, within HP15_3732 at 3954.540 kb on - strand, within HP15_3732 at 3954.540 kb on - strand, within HP15_3732 at 3954.560 kb on + strand, within HP15_3732 at 3954.560 kb on + strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.568 kb on - strand, within HP15_3732 at 3954.588 kb on + strand, within HP15_3732 at 3954.685 kb on - strand, within HP15_3732 at 3954.701 kb on + strand, within HP15_3732 at 3954.777 kb on - strand, within HP15_3732 at 3954.847 kb on - strand, within HP15_3732 at 3954.906 kb on + strand, within HP15_3732 at 3954.912 kb on + strand, within HP15_3732 at 3954.989 kb on - strand at 3954.990 kb on - strand at 3955.005 kb on + strand at 3955.008 kb on - strand at 3955.078 kb on + strand, within HP15_3733 at 3955.210 kb on + strand at 3955.245 kb on + strand, within HP15_3734 at 3955.253 kb on - strand, within HP15_3734 at 3955.330 kb on + strand, within HP15_3734 at 3955.486 kb on + strand, within HP15_3734 at 3955.494 kb on - strand, within HP15_3734 at 3955.510 kb on - strand, within HP15_3734 at 3955.550 kb on - strand, within HP15_3734 at 3955.636 kb on - strand at 3955.648 kb on + strand at 3955.648 kb on - strand at 3955.692 kb on + strand at 3955.698 kb on + strand at 3955.706 kb on - strand at 3955.814 kb on - strand, within HP15_3735 at 3955.902 kb on + strand, within HP15_3735 at 3956.115 kb on - strand, within HP15_3735 at 3956.115 kb on - strand, within HP15_3735 at 3956.128 kb on - strand, within HP15_3735 at 3956.150 kb on - strand, within HP15_3735
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 3,954,221 - HP15_3732 0.14 +0.6 3,954,280 + HP15_3732 0.20 +0.5 3,954,342 + HP15_3732 0.27 +0.5 3,954,375 - HP15_3732 0.31 -1.5 3,954,375 - HP15_3732 0.31 -0.5 3,954,382 - HP15_3732 0.31 +0.6 3,954,387 + HP15_3732 0.32 +1.9 3,954,540 - HP15_3732 0.49 +1.6 3,954,540 - HP15_3732 0.49 -0.5 3,954,560 + HP15_3732 0.51 +2.0 3,954,560 + HP15_3732 0.51 -0.7 3,954,568 - HP15_3732 0.52 +1.0 3,954,568 - HP15_3732 0.52 +1.4 3,954,568 - HP15_3732 0.52 +1.5 3,954,588 + HP15_3732 0.54 +0.7 3,954,685 - HP15_3732 0.65 -0.2 3,954,701 + HP15_3732 0.66 +1.9 3,954,777 - HP15_3732 0.75 -0.2 3,954,847 - HP15_3732 0.83 +1.1 3,954,906 + HP15_3732 0.89 +1.0 3,954,912 + HP15_3732 0.90 -1.3 3,954,989 - -0.7 3,954,990 - -0.5 3,955,005 + +0.9 3,955,008 - -0.7 3,955,078 + HP15_3733 0.12 -1.7 3,955,210 + -1.2 3,955,245 + HP15_3734 0.16 -0.1 3,955,253 - HP15_3734 0.18 -0.1 3,955,330 + HP15_3734 0.36 +1.0 3,955,486 + HP15_3734 0.71 +0.8 3,955,494 - HP15_3734 0.73 +0.9 3,955,510 - HP15_3734 0.76 +1.8 3,955,550 - HP15_3734 0.85 +2.3 3,955,636 - +2.3 3,955,648 + -1.4 3,955,648 - +0.0 3,955,692 + -1.0 3,955,698 + -0.1 3,955,706 - -0.6 3,955,814 - HP15_3735 0.27 -0.6 3,955,902 + HP15_3735 0.43 +1.9 3,956,115 - HP15_3735 0.80 +0.8 3,956,115 - HP15_3735 0.80 +1.5 3,956,128 - HP15_3735 0.83 -0.4 3,956,150 - HP15_3735 0.87 -1.3
Or see this region's nucleotide sequence