Strain Fitness in Marinobacter adhaerens HP15 around HP15_360

Experiment: monoculture; Experiment B, time point 7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_359 and HP15_360 are separated by 10 nucleotidesHP15_360 and HP15_361 overlap by 4 nucleotidesHP15_361 and HP15_362 are separated by 20 nucleotides HP15_359: HP15_359 - conserved hypothetical protein, at 360,019 to 361,131 _359 HP15_360: HP15_360 - conserved hypothetical protein, secreted, at 361,142 to 362,221 _360 HP15_361: HP15_361 - conserved hypothetical protein, secreted, at 362,218 to 362,766 _361 HP15_362: HP15_362 - conserved hypothetical protein, secreted, at 362,787 to 365,189 _362 Position (kb) 361 362 363Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 360.407 kb on + strand, within HP15_359at 360.413 kb on - strand, within HP15_359at 360.413 kb on - strand, within HP15_359at 360.413 kb on - strand, within HP15_359at 360.447 kb on - strand, within HP15_359at 360.489 kb on - strand, within HP15_359at 360.505 kb on - strand, within HP15_359at 360.540 kb on - strand, within HP15_359at 360.546 kb on + strand, within HP15_359at 360.547 kb on - strand, within HP15_359at 360.700 kb on - strand, within HP15_359at 360.729 kb on + strand, within HP15_359at 360.807 kb on + strand, within HP15_359at 360.885 kb on + strand, within HP15_359at 360.893 kb on - strand, within HP15_359at 360.960 kb on + strand, within HP15_359at 361.043 kb on + strandat 361.128 kb on - strandat 361.133 kb on - strandat 361.155 kb on + strandat 361.213 kb on - strandat 361.220 kb on + strandat 361.246 kb on - strandat 361.290 kb on + strand, within HP15_360at 361.290 kb on + strand, within HP15_360at 361.379 kb on + strand, within HP15_360at 361.463 kb on - strand, within HP15_360at 361.487 kb on + strand, within HP15_360at 361.550 kb on + strand, within HP15_360at 361.584 kb on - strand, within HP15_360at 361.584 kb on - strand, within HP15_360at 361.591 kb on + strand, within HP15_360at 361.592 kb on + strand, within HP15_360at 361.592 kb on + strand, within HP15_360at 361.592 kb on + strand, within HP15_360at 361.609 kb on + strand, within HP15_360at 361.640 kb on - strand, within HP15_360at 361.704 kb on - strand, within HP15_360at 361.709 kb on - strandat 361.713 kb on + strand, within HP15_360at 362.023 kb on + strand, within HP15_360at 362.093 kb on + strand, within HP15_360at 362.202 kb on + strandat 362.202 kb on - strandat 362.215 kb on - strandat 362.237 kb on + strandat 362.332 kb on - strand, within HP15_361at 362.332 kb on - strand, within HP15_361at 362.334 kb on + strand, within HP15_361at 362.334 kb on + strand, within HP15_361at 362.342 kb on - strand, within HP15_361at 362.342 kb on - strand, within HP15_361at 362.381 kb on + strand, within HP15_361at 362.394 kb on - strand, within HP15_361at 362.516 kb on + strand, within HP15_361at 362.579 kb on - strand, within HP15_361at 362.591 kb on + strand, within HP15_361at 362.601 kb on + strand, within HP15_361at 362.601 kb on + strand, within HP15_361at 362.601 kb on + strand, within HP15_361at 362.609 kb on - strand, within HP15_361at 362.609 kb on - strand, within HP15_361at 362.624 kb on - strand, within HP15_361at 362.646 kb on + strand, within HP15_361at 362.664 kb on - strand, within HP15_361at 362.675 kb on + strand, within HP15_361at 362.695 kb on - strand, within HP15_361at 362.776 kb on + strandat 362.776 kb on + strandat 362.776 kb on + strandat 362.784 kb on - strandat 362.784 kb on - strandat 362.802 kb on - strandat 362.832 kb on + strandat 362.854 kb on - strandat 362.855 kb on - strandat 362.889 kb on - strandat 362.890 kb on + strandat 362.941 kb on + strandat 362.966 kb on + strandat 363.030 kb on - strand, within HP15_362at 363.064 kb on + strand, within HP15_362at 363.160 kb on + strand, within HP15_362

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7
remove
360,407 + HP15_359 0.35 -1.6
360,413 - HP15_359 0.35 -0.1
360,413 - HP15_359 0.35 +2.6
360,413 - HP15_359 0.35 -0.5
360,447 - HP15_359 0.38 +2.3
360,489 - HP15_359 0.42 -0.7
360,505 - HP15_359 0.44 +1.1
360,540 - HP15_359 0.47 +1.1
360,546 + HP15_359 0.47 +2.6
360,547 - HP15_359 0.47 -2.4
360,700 - HP15_359 0.61 +2.0
360,729 + HP15_359 0.64 +1.3
360,807 + HP15_359 0.71 -0.7
360,885 + HP15_359 0.78 +1.0
360,893 - HP15_359 0.79 +0.1
360,960 + HP15_359 0.85 +1.8
361,043 + +1.1
361,128 - +2.9
361,133 - +1.3
361,155 + +1.6
361,213 - -1.0
361,220 + +0.3
361,246 - +0.1
361,290 + HP15_360 0.14 +4.9
361,290 + HP15_360 0.14 +1.4
361,379 + HP15_360 0.22 +1.2
361,463 - HP15_360 0.30 +1.5
361,487 + HP15_360 0.32 +0.8
361,550 + HP15_360 0.38 -2.5
361,584 - HP15_360 0.41 +1.7
361,584 - HP15_360 0.41 -0.1
361,591 + HP15_360 0.42 -0.6
361,592 + HP15_360 0.42 -1.4
361,592 + HP15_360 0.42 +1.1
361,592 + HP15_360 0.42 +0.7
361,609 + HP15_360 0.43 +0.3
361,640 - HP15_360 0.46 +2.1
361,704 - HP15_360 0.52 -1.9
361,709 - +1.4
361,713 + HP15_360 0.53 -0.4
362,023 + HP15_360 0.82 -0.1
362,093 + HP15_360 0.88 +1.1
362,202 + +3.5
362,202 - -0.1
362,215 - -0.5
362,237 + -0.3
362,332 - HP15_361 0.21 +0.8
362,332 - HP15_361 0.21 -0.0
362,334 + HP15_361 0.21 -1.9
362,334 + HP15_361 0.21 -2.1
362,342 - HP15_361 0.23 -2.0
362,342 - HP15_361 0.23 -0.5
362,381 + HP15_361 0.30 -1.0
362,394 - HP15_361 0.32 +1.0
362,516 + HP15_361 0.54 +1.3
362,579 - HP15_361 0.66 +1.5
362,591 + HP15_361 0.68 +1.7
362,601 + HP15_361 0.70 -0.3
362,601 + HP15_361 0.70 -2.2
362,601 + HP15_361 0.70 -1.8
362,609 - HP15_361 0.71 -1.9
362,609 - HP15_361 0.71 -0.8
362,624 - HP15_361 0.74 +0.5
362,646 + HP15_361 0.78 +0.8
362,664 - HP15_361 0.81 +0.9
362,675 + HP15_361 0.83 +2.6
362,695 - HP15_361 0.87 +0.2
362,776 + -0.3
362,776 + +2.0
362,776 + -0.7
362,784 - +1.7
362,784 - +1.0
362,802 - +0.7
362,832 + -1.3
362,854 - -0.5
362,855 - -2.0
362,889 - +1.4
362,890 + +2.0
362,941 + -0.3
362,966 + +0.7
363,030 - HP15_362 0.10 +2.0
363,064 + HP15_362 0.12 +1.8
363,160 + HP15_362 0.16 +1.0

Or see this region's nucleotide sequence