Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3243 and HP15_3244 are separated by 116 nucleotides HP15_3244 and HP15_3245 are separated by 9 nucleotides HP15_3245 and HP15_3246 are separated by 61 nucleotides HP15_3246 and HP15_3247 are separated by 145 nucleotides
HP15_3243: HP15_3243 - appr-1-p processing domain protein, at 3,397,493 to 3,398,026
_3243
HP15_3244: HP15_3244 - uncharacterized conserved protein UCP029033, periplasmic protein, at 3,398,143 to 3,398,853
_3244
HP15_3245: HP15_3245 - hyaluronidase, at 3,398,863 to 3,399,987
_3245
HP15_3246: HP15_3246 - ATPase, at 3,400,049 to 3,400,507
_3246
HP15_3247: HP15_3247 - twin-arginine translocation pathway signal, at 3,400,653 to 3,401,729
_3247
Position (kb)
3398
3399
3400 Strain fitness (log2 ratio)
-1
0
1
2 at 3398.075 kb on + strand at 3398.076 kb on - strand at 3398.199 kb on + strand at 3398.212 kb on - strand at 3398.217 kb on - strand, within HP15_3244 at 3398.262 kb on - strand, within HP15_3244 at 3398.312 kb on + strand, within HP15_3244 at 3398.335 kb on + strand, within HP15_3244 at 3398.392 kb on - strand, within HP15_3244 at 3398.445 kb on + strand, within HP15_3244 at 3398.450 kb on + strand, within HP15_3244 at 3398.475 kb on + strand, within HP15_3244 at 3398.521 kb on - strand, within HP15_3244 at 3398.521 kb on - strand, within HP15_3244 at 3398.542 kb on + strand, within HP15_3244 at 3398.555 kb on - strand, within HP15_3244 at 3398.576 kb on - strand, within HP15_3244 at 3398.590 kb on + strand, within HP15_3244 at 3398.661 kb on + strand, within HP15_3244 at 3398.676 kb on - strand, within HP15_3244 at 3398.791 kb on - strand at 3399.124 kb on - strand, within HP15_3245 at 3400.124 kb on - strand, within HP15_3246 at 3400.161 kb on - strand, within HP15_3246 at 3400.163 kb on + strand, within HP15_3246 at 3400.198 kb on + strand, within HP15_3246 at 3400.287 kb on + strand, within HP15_3246 at 3400.288 kb on + strand, within HP15_3246 at 3400.288 kb on + strand, within HP15_3246 at 3400.300 kb on + strand, within HP15_3246 at 3400.308 kb on - strand, within HP15_3246 at 3400.369 kb on + strand, within HP15_3246 at 3400.454 kb on - strand, within HP15_3246 at 3400.456 kb on + strand, within HP15_3246 at 3400.456 kb on + strand, within HP15_3246 at 3400.470 kb on - strand at 3400.623 kb on - strand at 3400.661 kb on - strand at 3400.663 kb on + strand at 3400.709 kb on - strand at 3400.898 kb on + strand, within HP15_3247 at 3400.906 kb on - strand, within HP15_3247 at 3400.911 kb on - strand, within HP15_3247 at 3400.921 kb on - strand, within HP15_3247 at 3400.935 kb on + strand, within HP15_3247
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 3,398,075 + -0.3 3,398,076 - +2.2 3,398,199 + +1.8 3,398,212 - +1.7 3,398,217 - HP15_3244 0.10 +2.5 3,398,262 - HP15_3244 0.17 +0.1 3,398,312 + HP15_3244 0.24 +1.5 3,398,335 + HP15_3244 0.27 +0.8 3,398,392 - HP15_3244 0.35 +1.0 3,398,445 + HP15_3244 0.42 +1.1 3,398,450 + HP15_3244 0.43 +0.1 3,398,475 + HP15_3244 0.47 +0.3 3,398,521 - HP15_3244 0.53 -1.4 3,398,521 - HP15_3244 0.53 -0.5 3,398,542 + HP15_3244 0.56 -0.6 3,398,555 - HP15_3244 0.58 +0.5 3,398,576 - HP15_3244 0.61 +0.6 3,398,590 + HP15_3244 0.63 +2.4 3,398,661 + HP15_3244 0.73 +1.0 3,398,676 - HP15_3244 0.75 +0.1 3,398,791 - +0.9 3,399,124 - HP15_3245 0.23 -0.3 3,400,124 - HP15_3246 0.16 +0.2 3,400,161 - HP15_3246 0.24 -1.3 3,400,163 + HP15_3246 0.25 +1.4 3,400,198 + HP15_3246 0.32 -1.2 3,400,287 + HP15_3246 0.52 -1.3 3,400,288 + HP15_3246 0.52 -0.8 3,400,288 + HP15_3246 0.52 -0.4 3,400,300 + HP15_3246 0.55 +1.1 3,400,308 - HP15_3246 0.56 +0.0 3,400,369 + HP15_3246 0.70 -0.1 3,400,454 - HP15_3246 0.88 -1.6 3,400,456 + HP15_3246 0.89 -0.4 3,400,456 + HP15_3246 0.89 +1.2 3,400,470 - +1.0 3,400,623 - +0.9 3,400,661 - +1.1 3,400,663 + -0.3 3,400,709 - +0.6 3,400,898 + HP15_3247 0.23 -1.2 3,400,906 - HP15_3247 0.23 -1.0 3,400,911 - HP15_3247 0.24 +0.2 3,400,921 - HP15_3247 0.25 -1.0 3,400,935 + HP15_3247 0.26 -0.8
Or see this region's nucleotide sequence