Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3097 and HP15_3098 are separated by 193 nucleotides HP15_3098 and HP15_3099 are separated by 5 nucleotides HP15_3099 and HP15_3100 are separated by 20 nucleotides HP15_3100 and HP15_3101 are separated by 3 nucleotides
HP15_3097: HP15_3097 - hypothetical protein, at 3,252,535 to 3,253,833
_3097
HP15_3098: HP15_3098 - membrane protein, at 3,254,027 to 3,254,269
_3098
HP15_3099: HP15_3099 - hypothetical protein, at 3,254,275 to 3,254,484
_3099
HP15_3100: HP15_3100 - hypothetical protein, at 3,254,505 to 3,254,801
_3100
HP15_3101: HP15_3101 - hypothetical protein, at 3,254,805 to 3,254,921
_3101
Position (kb)
3254
3255 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3253.046 kb on + strand, within HP15_3097 at 3253.069 kb on - strand, within HP15_3097 at 3253.122 kb on - strand, within HP15_3097 at 3253.240 kb on + strand, within HP15_3097 at 3253.285 kb on + strand, within HP15_3097 at 3253.293 kb on - strand, within HP15_3097 at 3253.362 kb on - strand, within HP15_3097 at 3253.395 kb on - strand, within HP15_3097 at 3253.401 kb on - strand, within HP15_3097 at 3253.441 kb on + strand, within HP15_3097 at 3253.493 kb on - strand, within HP15_3097 at 3253.550 kb on + strand, within HP15_3097 at 3253.558 kb on - strand, within HP15_3097 at 3253.566 kb on - strand, within HP15_3097 at 3253.647 kb on + strand, within HP15_3097 at 3253.767 kb on + strand at 3253.774 kb on + strand at 3253.774 kb on + strand at 3253.775 kb on - strand at 3253.782 kb on - strand at 3253.803 kb on - strand at 3253.823 kb on + strand at 3253.823 kb on + strand at 3253.917 kb on - strand at 3253.946 kb on - strand at 3253.946 kb on - strand at 3254.006 kb on - strand at 3254.011 kb on + strand at 3254.016 kb on + strand at 3254.098 kb on - strand, within HP15_3098 at 3254.149 kb on - strand, within HP15_3098 at 3254.207 kb on + strand, within HP15_3098 at 3254.210 kb on - strand, within HP15_3098 at 3254.225 kb on - strand, within HP15_3098 at 3254.323 kb on - strand, within HP15_3099 at 3254.325 kb on + strand, within HP15_3099 at 3254.345 kb on - strand, within HP15_3099 at 3254.345 kb on - strand, within HP15_3099 at 3254.411 kb on - strand, within HP15_3099 at 3254.418 kb on + strand, within HP15_3099 at 3254.423 kb on + strand, within HP15_3099 at 3254.428 kb on + strand, within HP15_3099 at 3254.431 kb on - strand, within HP15_3099 at 3254.436 kb on - strand, within HP15_3099 at 3254.469 kb on + strand at 3254.469 kb on - strand at 3254.730 kb on - strand, within HP15_3100 at 3255.087 kb on - strand at 3255.089 kb on + strand at 3255.110 kb on - strand at 3255.181 kb on + strand at 3255.258 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 3,253,046 + HP15_3097 0.39 -1.5 3,253,069 - HP15_3097 0.41 +0.3 3,253,122 - HP15_3097 0.45 -1.1 3,253,240 + HP15_3097 0.54 +3.3 3,253,285 + HP15_3097 0.58 +1.3 3,253,293 - HP15_3097 0.58 -0.2 3,253,362 - HP15_3097 0.64 -0.4 3,253,395 - HP15_3097 0.66 +0.2 3,253,401 - HP15_3097 0.67 +2.2 3,253,441 + HP15_3097 0.70 -0.4 3,253,493 - HP15_3097 0.74 -2.2 3,253,550 + HP15_3097 0.78 -0.8 3,253,558 - HP15_3097 0.79 +0.1 3,253,566 - HP15_3097 0.79 +1.2 3,253,647 + HP15_3097 0.86 -1.0 3,253,767 + +2.0 3,253,774 + -0.5 3,253,774 + +0.5 3,253,775 - +0.2 3,253,782 - -0.3 3,253,803 - -0.8 3,253,823 + +1.0 3,253,823 + +0.6 3,253,917 - +1.4 3,253,946 - +0.9 3,253,946 - -0.2 3,254,006 - +1.4 3,254,011 + +0.8 3,254,016 + -1.4 3,254,098 - HP15_3098 0.29 +0.3 3,254,149 - HP15_3098 0.50 -0.6 3,254,207 + HP15_3098 0.74 +2.2 3,254,210 - HP15_3098 0.75 +0.1 3,254,225 - HP15_3098 0.81 +1.4 3,254,323 - HP15_3099 0.23 +1.4 3,254,325 + HP15_3099 0.24 -0.7 3,254,345 - HP15_3099 0.33 -0.5 3,254,345 - HP15_3099 0.33 +1.2 3,254,411 - HP15_3099 0.65 +0.3 3,254,418 + HP15_3099 0.68 +0.2 3,254,423 + HP15_3099 0.70 +0.1 3,254,428 + HP15_3099 0.73 -1.0 3,254,431 - HP15_3099 0.74 -0.7 3,254,436 - HP15_3099 0.77 -0.5 3,254,469 + -0.2 3,254,469 - +1.5 3,254,730 - HP15_3100 0.76 -1.3 3,255,087 - -1.0 3,255,089 + +1.1 3,255,110 - +2.0 3,255,181 + -0.8 3,255,258 - +0.7
Or see this region's nucleotide sequence