Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_308 and HP15_309 are separated by 8 nucleotides HP15_309 and HP15_310 are separated by 151 nucleotides
HP15_308: HP15_308 - oxidative stress regulatory protein OxyR, at 298,572 to 299,531
_308
HP15_309: HP15_309 - DNA helicase, ATP-dependent, RecG, at 299,540 to 301,615
_309
HP15_310: HP15_310 - signal transduction protein, at 301,767 to 303,131
_310
Position (kb) 299
300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 298.571 kb on - strand at 298.576 kb on - strand at 298.576 kb on - strand at 298.677 kb on - strand, within HP15_308 at 298.810 kb on - strand, within HP15_308 at 298.811 kb on - strand, within HP15_308 at 298.870 kb on - strand, within HP15_308 at 298.890 kb on - strand, within HP15_308 at 298.949 kb on + strand, within HP15_308 at 298.957 kb on - strand, within HP15_308 at 299.173 kb on - strand, within HP15_308 at 299.301 kb on - strand, within HP15_308 at 299.401 kb on - strand, within HP15_308 at 299.435 kb on + strand, within HP15_308 at 299.435 kb on + strand, within HP15_308 at 299.506 kb on + strand at 299.572 kb on + strand at 299.572 kb on + strand at 299.572 kb on + strand at 299.580 kb on - strand at 299.580 kb on - strand at 299.644 kb on + strand at 299.841 kb on + strand, within HP15_309 at 299.914 kb on - strand, within HP15_309 at 299.914 kb on - strand, within HP15_309 at 299.947 kb on + strand, within HP15_309 at 299.963 kb on + strand, within HP15_309 at 299.972 kb on + strand, within HP15_309 at 299.980 kb on - strand, within HP15_309 at 300.051 kb on + strand, within HP15_309 at 300.059 kb on - strand, within HP15_309 at 300.059 kb on - strand, within HP15_309 at 300.175 kb on + strand, within HP15_309 at 300.231 kb on + strand, within HP15_309 at 300.246 kb on + strand, within HP15_309 at 300.254 kb on - strand, within HP15_309 at 300.304 kb on + strand, within HP15_309 at 300.405 kb on - strand, within HP15_309 at 300.427 kb on - strand, within HP15_309 at 300.566 kb on - strand, within HP15_309 at 300.601 kb on + strand, within HP15_309 at 300.609 kb on - strand, within HP15_309 at 300.672 kb on + strand, within HP15_309 at 300.680 kb on - strand, within HP15_309 at 300.682 kb on + strand, within HP15_309 at 300.682 kb on + strand, within HP15_309 at 300.708 kb on + strand, within HP15_309 at 300.767 kb on - strand, within HP15_309 at 300.863 kb on + strand, within HP15_309 at 300.871 kb on - strand, within HP15_309 at 300.871 kb on - strand, within HP15_309 at 301.036 kb on + strand, within HP15_309 at 301.044 kb on - strand, within HP15_309 at 301.058 kb on + strand, within HP15_309 at 301.122 kb on - strand, within HP15_309 at 301.150 kb on + strand, within HP15_309 at 301.264 kb on - strand, within HP15_309 at 301.439 kb on + strand at 301.486 kb on + strand at 301.501 kb on + strand at 301.566 kb on - strand at 301.618 kb on - strand at 301.698 kb on + strand at 301.816 kb on + strand at 301.857 kb on - strand at 301.874 kb on + strand at 301.877 kb on - strand at 301.882 kb on - strand at 302.003 kb on + strand, within HP15_310 at 302.016 kb on - strand, within HP15_310 at 302.051 kb on - strand, within HP15_310 at 302.053 kb on + strand, within HP15_310 at 302.087 kb on + strand, within HP15_310 at 302.106 kb on - strand, within HP15_310 at 302.134 kb on + strand, within HP15_310 at 302.305 kb on + strand, within HP15_310 at 302.313 kb on - strand, within HP15_310 at 302.313 kb on - strand, within HP15_310 at 302.426 kb on + strand, within HP15_310 at 302.495 kb on + strand, within HP15_310
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 298,571 - -3.3 298,576 - -0.9 298,576 - -1.3 298,677 - HP15_308 0.11 -1.0 298,810 - HP15_308 0.25 -0.7 298,811 - HP15_308 0.25 -2.3 298,870 - HP15_308 0.31 -2.0 298,890 - HP15_308 0.33 -1.7 298,949 + HP15_308 0.39 -0.3 298,957 - HP15_308 0.40 -2.1 299,173 - HP15_308 0.63 -2.2 299,301 - HP15_308 0.76 +0.2 299,401 - HP15_308 0.86 -1.7 299,435 + HP15_308 0.90 -0.4 299,435 + HP15_308 0.90 -0.3 299,506 + -1.4 299,572 + -1.2 299,572 + +1.2 299,572 + -0.2 299,580 - +0.7 299,580 - -0.9 299,644 + -1.1 299,841 + HP15_309 0.14 -2.1 299,914 - HP15_309 0.18 -0.7 299,914 - HP15_309 0.18 +1.4 299,947 + HP15_309 0.20 -3.0 299,963 + HP15_309 0.20 -3.7 299,972 + HP15_309 0.21 -3.3 299,980 - HP15_309 0.21 -2.8 300,051 + HP15_309 0.25 -2.0 300,059 - HP15_309 0.25 -2.6 300,059 - HP15_309 0.25 -0.0 300,175 + HP15_309 0.31 -2.5 300,231 + HP15_309 0.33 -0.8 300,246 + HP15_309 0.34 -2.8 300,254 - HP15_309 0.34 +0.2 300,304 + HP15_309 0.37 -0.2 300,405 - HP15_309 0.42 -0.3 300,427 - HP15_309 0.43 +0.8 300,566 - HP15_309 0.49 -2.8 300,601 + HP15_309 0.51 -2.1 300,609 - HP15_309 0.51 +0.9 300,672 + HP15_309 0.55 -2.5 300,680 - HP15_309 0.55 -0.1 300,682 + HP15_309 0.55 -1.9 300,682 + HP15_309 0.55 -2.8 300,708 + HP15_309 0.56 -0.7 300,767 - HP15_309 0.59 -1.8 300,863 + HP15_309 0.64 -2.2 300,871 - HP15_309 0.64 -0.5 300,871 - HP15_309 0.64 -2.5 301,036 + HP15_309 0.72 -0.2 301,044 - HP15_309 0.72 -0.9 301,058 + HP15_309 0.73 -0.9 301,122 - HP15_309 0.76 +0.8 301,150 + HP15_309 0.78 -1.1 301,264 - HP15_309 0.83 -1.8 301,439 + -2.1 301,486 + -1.5 301,501 + -1.1 301,566 - +0.4 301,618 - -1.0 301,698 + +1.9 301,816 + -0.0 301,857 - +0.8 301,874 + -0.8 301,877 - -1.4 301,882 - +0.8 302,003 + HP15_310 0.17 -2.1 302,016 - HP15_310 0.18 -1.1 302,051 - HP15_310 0.21 -0.3 302,053 + HP15_310 0.21 +0.4 302,087 + HP15_310 0.23 -2.8 302,106 - HP15_310 0.25 -0.7 302,134 + HP15_310 0.27 +0.8 302,305 + HP15_310 0.39 -0.0 302,313 - HP15_310 0.40 -0.4 302,313 - HP15_310 0.40 +2.0 302,426 + HP15_310 0.48 +1.4 302,495 + HP15_310 0.53 -0.0
Or see this region's nucleotide sequence