Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3035 and HP15_3036 overlap by 1 nucleotides HP15_3036 and HP15_3037 are separated by 151 nucleotides HP15_3037 and HP15_3038 are separated by 22 nucleotides
HP15_3035: HP15_3035 - transporter, AcrB/D/F family, at 3,179,025 to 3,182,051
_3035
HP15_3036: HP15_3036 - efflux transporter, RND family, MFP subunit, at 3,182,051 to 3,183,145
_3036
HP15_3037: HP15_3037 - transcriptional regulator, TetR family protein, at 3,183,297 to 3,183,932
_3037
HP15_3038: HP15_3038 - N-succinylarginine dihydrolase, at 3,183,955 to 3,185,295
_3038
Position (kb)
3182
3183
3184 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3181.080 kb on - strand, within HP15_3035 at 3181.116 kb on + strand, within HP15_3035 at 3181.148 kb on - strand, within HP15_3035 at 3181.148 kb on - strand, within HP15_3035 at 3181.315 kb on - strand, within HP15_3035 at 3181.406 kb on + strand, within HP15_3035 at 3181.425 kb on + strand, within HP15_3035 at 3181.439 kb on + strand, within HP15_3035 at 3181.691 kb on - strand, within HP15_3035 at 3181.839 kb on - strand at 3181.925 kb on - strand at 3182.002 kb on + strand at 3182.115 kb on + strand at 3182.123 kb on - strand at 3182.154 kb on + strand at 3182.241 kb on + strand, within HP15_3036 at 3182.249 kb on - strand, within HP15_3036 at 3182.319 kb on - strand, within HP15_3036 at 3182.367 kb on + strand, within HP15_3036 at 3182.372 kb on + strand, within HP15_3036 at 3182.382 kb on + strand, within HP15_3036 at 3182.428 kb on - strand, within HP15_3036 at 3182.447 kb on - strand, within HP15_3036 at 3182.447 kb on - strand, within HP15_3036 at 3182.491 kb on + strand, within HP15_3036 at 3182.499 kb on - strand, within HP15_3036 at 3182.504 kb on + strand, within HP15_3036 at 3182.574 kb on + strand, within HP15_3036 at 3182.574 kb on + strand, within HP15_3036 at 3182.582 kb on - strand, within HP15_3036 at 3182.620 kb on - strand, within HP15_3036 at 3182.668 kb on + strand, within HP15_3036 at 3182.676 kb on - strand, within HP15_3036 at 3182.676 kb on - strand, within HP15_3036 at 3182.688 kb on + strand, within HP15_3036 at 3182.696 kb on - strand, within HP15_3036 at 3182.714 kb on + strand, within HP15_3036 at 3182.749 kb on + strand, within HP15_3036 at 3182.789 kb on - strand, within HP15_3036 at 3182.801 kb on + strand, within HP15_3036 at 3182.864 kb on + strand, within HP15_3036 at 3182.907 kb on - strand, within HP15_3036 at 3182.907 kb on - strand, within HP15_3036 at 3183.046 kb on - strand at 3183.362 kb on - strand, within HP15_3037 at 3183.413 kb on - strand, within HP15_3037 at 3183.695 kb on - strand, within HP15_3037 at 3183.803 kb on - strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.813 kb on + strand, within HP15_3037 at 3183.831 kb on - strand, within HP15_3037 at 3183.857 kb on + strand, within HP15_3037 at 3183.865 kb on - strand, within HP15_3037 at 3183.906 kb on - strand at 3184.014 kb on - strand at 3184.071 kb on - strand at 3184.114 kb on - strand, within HP15_3038 at 3184.131 kb on - strand, within HP15_3038
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 3,181,080 - HP15_3035 0.68 -3.2 3,181,116 + HP15_3035 0.69 +1.7 3,181,148 - HP15_3035 0.70 -0.5 3,181,148 - HP15_3035 0.70 +0.7 3,181,315 - HP15_3035 0.76 +0.9 3,181,406 + HP15_3035 0.79 +0.4 3,181,425 + HP15_3035 0.79 -0.3 3,181,439 + HP15_3035 0.80 +2.8 3,181,691 - HP15_3035 0.88 -1.0 3,181,839 - +0.8 3,181,925 - +1.3 3,182,002 + +1.3 3,182,115 + +0.2 3,182,123 - -2.6 3,182,154 + -0.7 3,182,241 + HP15_3036 0.17 +2.2 3,182,249 - HP15_3036 0.18 +2.1 3,182,319 - HP15_3036 0.24 -3.0 3,182,367 + HP15_3036 0.29 -0.0 3,182,372 + HP15_3036 0.29 -2.1 3,182,382 + HP15_3036 0.30 +0.0 3,182,428 - HP15_3036 0.34 +1.2 3,182,447 - HP15_3036 0.36 -0.3 3,182,447 - HP15_3036 0.36 +1.9 3,182,491 + HP15_3036 0.40 -0.4 3,182,499 - HP15_3036 0.41 -0.4 3,182,504 + HP15_3036 0.41 +0.2 3,182,574 + HP15_3036 0.48 +0.1 3,182,574 + HP15_3036 0.48 +0.7 3,182,582 - HP15_3036 0.48 -1.8 3,182,620 - HP15_3036 0.52 -0.1 3,182,668 + HP15_3036 0.56 +1.0 3,182,676 - HP15_3036 0.57 -1.4 3,182,676 - HP15_3036 0.57 -1.3 3,182,688 + HP15_3036 0.58 +0.1 3,182,696 - HP15_3036 0.59 +0.2 3,182,714 + HP15_3036 0.61 -0.8 3,182,749 + HP15_3036 0.64 -1.1 3,182,789 - HP15_3036 0.67 -1.4 3,182,801 + HP15_3036 0.68 -0.2 3,182,864 + HP15_3036 0.74 -0.2 3,182,907 - HP15_3036 0.78 +2.6 3,182,907 - HP15_3036 0.78 +1.3 3,183,046 - -1.7 3,183,362 - HP15_3037 0.10 -0.2 3,183,413 - HP15_3037 0.18 -1.0 3,183,695 - HP15_3037 0.63 -0.7 3,183,803 - HP15_3037 0.80 -1.2 3,183,813 + HP15_3037 0.81 +0.5 3,183,813 + HP15_3037 0.81 -1.1 3,183,813 + HP15_3037 0.81 +2.7 3,183,831 - HP15_3037 0.84 -1.6 3,183,857 + HP15_3037 0.88 -0.2 3,183,865 - HP15_3037 0.89 -0.8 3,183,906 - +1.2 3,184,014 - +1.5 3,184,071 - +0.2 3,184,114 - HP15_3038 0.12 -2.3 3,184,131 - HP15_3038 0.13 -2.6
Or see this region's nucleotide sequence