Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2925 and HP15_2926 are separated by 29 nucleotides HP15_2926 and HP15_2927 are separated by 119 nucleotides
HP15_2925: HP15_2925 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,063,695 to 3,065,047
_2925
HP15_2926: HP15_2926 - ribosomal RNA small subunit methyltransferase E, at 3,065,077 to 3,065,811
_2926
HP15_2927: HP15_2927 - conserved hypothetical protein, membrane, at 3,065,931 to 3,067,160
_2927
Position (kb)
3065
3066 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3064.119 kb on + strand, within HP15_2925 at 3064.146 kb on + strand, within HP15_2925 at 3064.186 kb on + strand, within HP15_2925 at 3064.407 kb on + strand, within HP15_2925 at 3064.440 kb on + strand, within HP15_2925 at 3064.500 kb on + strand, within HP15_2925 at 3064.547 kb on + strand, within HP15_2925 at 3064.548 kb on - strand, within HP15_2925 at 3064.588 kb on - strand, within HP15_2925 at 3064.590 kb on + strand, within HP15_2925 at 3064.637 kb on - strand, within HP15_2925 at 3064.670 kb on + strand, within HP15_2925 at 3064.708 kb on - strand, within HP15_2925 at 3064.734 kb on - strand, within HP15_2925 at 3064.745 kb on + strand, within HP15_2925 at 3064.789 kb on + strand, within HP15_2925 at 3064.803 kb on - strand, within HP15_2925 at 3064.875 kb on + strand, within HP15_2925 at 3064.950 kb on - strand at 3065.021 kb on + strand at 3065.022 kb on + strand at 3065.029 kb on - strand at 3065.029 kb on - strand at 3065.088 kb on - strand at 3065.094 kb on - strand at 3065.118 kb on + strand at 3065.118 kb on + strand at 3065.137 kb on + strand at 3065.193 kb on - strand, within HP15_2926 at 3065.279 kb on - strand, within HP15_2926 at 3065.330 kb on - strand, within HP15_2926 at 3065.337 kb on - strand, within HP15_2926 at 3065.352 kb on + strand, within HP15_2926 at 3065.396 kb on - strand, within HP15_2926 at 3065.430 kb on + strand, within HP15_2926 at 3065.497 kb on - strand, within HP15_2926 at 3065.560 kb on - strand, within HP15_2926 at 3065.877 kb on + strand at 3065.886 kb on - strand at 3066.035 kb on + strand at 3066.146 kb on + strand, within HP15_2927 at 3066.154 kb on - strand, within HP15_2927 at 3066.199 kb on + strand, within HP15_2927 at 3066.472 kb on - strand, within HP15_2927 at 3066.506 kb on - strand, within HP15_2927 at 3066.523 kb on + strand, within HP15_2927 at 3066.583 kb on + strand, within HP15_2927 at 3066.779 kb on + strand, within HP15_2927 at 3066.779 kb on + strand, within HP15_2927 at 3066.779 kb on + strand, within HP15_2927 at 3066.787 kb on - strand, within HP15_2927 at 3066.787 kb on - strand, within HP15_2927 at 3066.787 kb on - strand, within HP15_2927
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 3,064,119 + HP15_2925 0.31 -1.8 3,064,146 + HP15_2925 0.33 -2.3 3,064,186 + HP15_2925 0.36 -0.2 3,064,407 + HP15_2925 0.53 +0.1 3,064,440 + HP15_2925 0.55 -1.0 3,064,500 + HP15_2925 0.59 -0.1 3,064,547 + HP15_2925 0.63 -1.2 3,064,548 - HP15_2925 0.63 +0.2 3,064,588 - HP15_2925 0.66 +0.1 3,064,590 + HP15_2925 0.66 -1.2 3,064,637 - HP15_2925 0.70 +0.4 3,064,670 + HP15_2925 0.72 +1.3 3,064,708 - HP15_2925 0.75 -1.7 3,064,734 - HP15_2925 0.77 -1.5 3,064,745 + HP15_2925 0.78 -2.2 3,064,789 + HP15_2925 0.81 +1.1 3,064,803 - HP15_2925 0.82 -0.6 3,064,875 + HP15_2925 0.87 -1.1 3,064,950 - -1.1 3,065,021 + -3.0 3,065,022 + +0.2 3,065,029 - -0.5 3,065,029 - -1.0 3,065,088 - +1.1 3,065,094 - -2.5 3,065,118 + +1.4 3,065,118 + -0.6 3,065,137 + +0.2 3,065,193 - HP15_2926 0.16 +1.4 3,065,279 - HP15_2926 0.27 +1.4 3,065,330 - HP15_2926 0.34 +1.7 3,065,337 - HP15_2926 0.35 +2.3 3,065,352 + HP15_2926 0.37 -1.1 3,065,396 - HP15_2926 0.43 -0.8 3,065,430 + HP15_2926 0.48 -1.2 3,065,497 - HP15_2926 0.57 +0.6 3,065,560 - HP15_2926 0.66 +1.4 3,065,877 + -1.6 3,065,886 - -0.8 3,066,035 + +0.4 3,066,146 + HP15_2927 0.17 +1.2 3,066,154 - HP15_2927 0.18 -0.6 3,066,199 + HP15_2927 0.22 -0.1 3,066,472 - HP15_2927 0.44 -2.0 3,066,506 - HP15_2927 0.47 +1.2 3,066,523 + HP15_2927 0.48 -0.1 3,066,583 + HP15_2927 0.53 -0.1 3,066,779 + HP15_2927 0.69 +2.0 3,066,779 + HP15_2927 0.69 -3.1 3,066,779 + HP15_2927 0.69 +0.3 3,066,787 - HP15_2927 0.70 +1.7 3,066,787 - HP15_2927 0.70 -0.4 3,066,787 - HP15_2927 0.70 -0.8
Or see this region's nucleotide sequence