Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_287 and HP15_288 are separated by 61 nucleotides HP15_288 and HP15_289 are separated by 224 nucleotides HP15_289 and HP15_290 are separated by 42 nucleotides
HP15_287: HP15_287 - pyrroline-5-carboxylate reductase, at 278,227 to 279,060
_287
HP15_288: HP15_288 - alanine racemase domain protein, at 279,122 to 279,742
_288
HP15_289: HP15_289 - twitching motility protein PilT, at 279,967 to 281,001
_289
HP15_290: HP15_290 - twitching motility protein PilU PilT, at 281,044 to 282,165
_290
Position (kb) 279
280
281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 279.061 kb on + strand at 279.067 kb on + strand at 279.094 kb on + strand at 279.097 kb on - strand at 279.102 kb on - strand at 279.151 kb on + strand at 279.151 kb on + strand at 279.159 kb on - strand at 279.159 kb on - strand at 279.164 kb on - strand at 279.228 kb on + strand, within HP15_288 at 279.231 kb on - strand, within HP15_288 at 279.261 kb on - strand, within HP15_288 at 279.312 kb on + strand, within HP15_288 at 279.411 kb on - strand, within HP15_288 at 279.510 kb on + strand, within HP15_288 at 279.510 kb on + strand, within HP15_288 at 279.623 kb on + strand, within HP15_288 at 279.654 kb on - strand, within HP15_288 at 279.739 kb on + strand at 279.739 kb on + strand at 279.811 kb on + strand at 279.824 kb on - strand at 280.133 kb on + strand, within HP15_289 at 280.251 kb on + strand, within HP15_289 at 280.273 kb on + strand, within HP15_289 at 280.330 kb on - strand, within HP15_289 at 280.337 kb on + strand, within HP15_289 at 280.345 kb on - strand, within HP15_289 at 280.364 kb on + strand, within HP15_289 at 280.536 kb on - strand, within HP15_289 at 280.576 kb on - strand, within HP15_289 at 280.578 kb on + strand, within HP15_289 at 280.640 kb on - strand, within HP15_289 at 280.694 kb on - strand, within HP15_289 at 280.732 kb on - strand, within HP15_289 at 280.866 kb on + strand, within HP15_289 at 280.930 kb on - strand at 280.971 kb on + strand at 280.971 kb on + strand at 280.995 kb on + strand at 281.131 kb on - strand at 281.181 kb on + strand, within HP15_290 at 281.326 kb on + strand, within HP15_290 at 281.397 kb on + strand, within HP15_290 at 281.405 kb on - strand, within HP15_290 at 281.426 kb on - strand, within HP15_290 at 281.451 kb on + strand, within HP15_290 at 281.550 kb on + strand, within HP15_290 at 281.558 kb on - strand, within HP15_290 at 281.560 kb on - strand, within HP15_290 at 281.580 kb on + strand, within HP15_290 at 281.610 kb on + strand, within HP15_290 at 281.618 kb on - strand, within HP15_290 at 281.625 kb on - strand, within HP15_290 at 281.630 kb on + strand, within HP15_290 at 281.641 kb on + strand, within HP15_290 at 281.754 kb on + strand, within HP15_290 at 281.801 kb on + strand, within HP15_290 at 281.834 kb on + strand, within HP15_290 at 281.837 kb on - strand, within HP15_290 at 281.898 kb on - strand, within HP15_290 at 281.903 kb on - strand, within HP15_290 at 281.903 kb on - strand, within HP15_290 at 281.903 kb on - strand, within HP15_290 at 281.945 kb on + strand, within HP15_290 at 281.990 kb on + strand, within HP15_290
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 279,061 + +1.0 279,067 + -0.2 279,094 + -2.0 279,097 - +1.4 279,102 - -1.8 279,151 + +0.4 279,151 + +1.0 279,159 - -1.2 279,159 - -1.1 279,164 - -2.7 279,228 + HP15_288 0.17 +0.2 279,231 - HP15_288 0.18 +0.7 279,261 - HP15_288 0.22 +1.2 279,312 + HP15_288 0.31 +1.4 279,411 - HP15_288 0.47 -1.7 279,510 + HP15_288 0.62 +0.2 279,510 + HP15_288 0.62 +1.3 279,623 + HP15_288 0.81 +0.3 279,654 - HP15_288 0.86 +0.9 279,739 + +1.8 279,739 + -0.7 279,811 + -0.7 279,824 - -0.0 280,133 + HP15_289 0.16 -1.8 280,251 + HP15_289 0.27 +0.1 280,273 + HP15_289 0.30 -2.1 280,330 - HP15_289 0.35 +1.2 280,337 + HP15_289 0.36 +0.5 280,345 - HP15_289 0.37 +0.3 280,364 + HP15_289 0.38 -3.1 280,536 - HP15_289 0.55 -0.9 280,576 - HP15_289 0.59 -1.0 280,578 + HP15_289 0.59 -0.4 280,640 - HP15_289 0.65 -1.3 280,694 - HP15_289 0.70 -0.9 280,732 - HP15_289 0.74 -1.4 280,866 + HP15_289 0.87 +1.2 280,930 - -3.1 280,971 + -0.6 280,971 + +1.5 280,995 + +1.4 281,131 - -0.3 281,181 + HP15_290 0.12 +1.1 281,326 + HP15_290 0.25 -0.4 281,397 + HP15_290 0.31 -1.7 281,405 - HP15_290 0.32 +0.1 281,426 - HP15_290 0.34 +2.0 281,451 + HP15_290 0.36 -1.5 281,550 + HP15_290 0.45 +0.8 281,558 - HP15_290 0.46 -1.0 281,560 - HP15_290 0.46 +2.2 281,580 + HP15_290 0.48 +3.7 281,610 + HP15_290 0.50 +0.4 281,618 - HP15_290 0.51 +0.0 281,625 - HP15_290 0.52 +0.4 281,630 + HP15_290 0.52 -1.8 281,641 + HP15_290 0.53 -0.3 281,754 + HP15_290 0.63 +0.3 281,801 + HP15_290 0.67 +0.5 281,834 + HP15_290 0.70 +0.9 281,837 - HP15_290 0.71 -3.0 281,898 - HP15_290 0.76 -2.7 281,903 - HP15_290 0.77 -0.2 281,903 - HP15_290 0.77 -0.4 281,903 - HP15_290 0.77 -0.9 281,945 + HP15_290 0.80 -0.3 281,990 + HP15_290 0.84 -0.9
Or see this region's nucleotide sequence