Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2770 and HP15_2771 are separated by 0 nucleotides HP15_2771 and HP15_2772 are separated by 41 nucleotides
HP15_2770: HP15_2770 - permease for cytosine/purines uracil thiamine allantoin, at 2,923,117 to 2,924,400
_2770
HP15_2771: HP15_2771 - DNA-binding protein, at 2,924,401 to 2,925,024
_2771
HP15_2772: HP15_2772 - N-isopropylammelide isopropylaminohydrolase, at 2,925,066 to 2,926,310
_2772
Position (kb)
2924
2925
2926 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2923.467 kb on - strand, within HP15_2770 at 2923.559 kb on + strand, within HP15_2770 at 2923.590 kb on + strand, within HP15_2770 at 2923.599 kb on + strand, within HP15_2770 at 2923.641 kb on + strand, within HP15_2770 at 2923.691 kb on + strand, within HP15_2770 at 2923.691 kb on + strand, within HP15_2770 at 2923.696 kb on + strand, within HP15_2770 at 2923.699 kb on - strand, within HP15_2770 at 2923.737 kb on + strand, within HP15_2770 at 2923.849 kb on + strand, within HP15_2770 at 2923.858 kb on + strand, within HP15_2770 at 2923.858 kb on + strand, within HP15_2770 at 2923.863 kb on + strand, within HP15_2770 at 2923.871 kb on + strand, within HP15_2770 at 2923.895 kb on + strand, within HP15_2770 at 2923.919 kb on - strand, within HP15_2770 at 2923.929 kb on - strand, within HP15_2770 at 2923.975 kb on + strand, within HP15_2770 at 2923.975 kb on + strand, within HP15_2770 at 2923.983 kb on - strand, within HP15_2770 at 2923.988 kb on - strand, within HP15_2770 at 2923.990 kb on + strand, within HP15_2770 at 2923.990 kb on + strand, within HP15_2770 at 2924.025 kb on - strand, within HP15_2770 at 2924.085 kb on - strand, within HP15_2770 at 2924.206 kb on - strand, within HP15_2770 at 2924.213 kb on + strand, within HP15_2770 at 2924.283 kb on - strand at 2924.323 kb on + strand at 2924.331 kb on - strand at 2924.423 kb on + strand at 2924.423 kb on + strand at 2924.430 kb on - strand at 2924.430 kb on - strand at 2924.495 kb on + strand, within HP15_2771 at 2924.532 kb on + strand, within HP15_2771 at 2924.611 kb on - strand, within HP15_2771 at 2924.676 kb on + strand, within HP15_2771 at 2924.684 kb on + strand, within HP15_2771 at 2924.697 kb on + strand, within HP15_2771 at 2924.738 kb on - strand, within HP15_2771 at 2924.738 kb on - strand, within HP15_2771 at 2924.738 kb on - strand, within HP15_2771 at 2924.786 kb on + strand, within HP15_2771 at 2924.824 kb on - strand, within HP15_2771 at 2924.875 kb on + strand, within HP15_2771 at 2924.992 kb on + strand at 2925.398 kb on + strand, within HP15_2772 at 2925.423 kb on + strand, within HP15_2772 at 2925.431 kb on - strand, within HP15_2772 at 2925.460 kb on + strand, within HP15_2772 at 2925.580 kb on + strand, within HP15_2772 at 2925.616 kb on - strand, within HP15_2772 at 2925.623 kb on + strand, within HP15_2772 at 2925.631 kb on - strand, within HP15_2772 at 2925.691 kb on - strand, within HP15_2772 at 2925.787 kb on + strand, within HP15_2772
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 2,923,467 - HP15_2770 0.27 -0.8 2,923,559 + HP15_2770 0.34 +0.2 2,923,590 + HP15_2770 0.37 +0.3 2,923,599 + HP15_2770 0.38 +1.3 2,923,641 + HP15_2770 0.41 +0.9 2,923,691 + HP15_2770 0.45 +1.8 2,923,691 + HP15_2770 0.45 -0.6 2,923,696 + HP15_2770 0.45 +0.0 2,923,699 - HP15_2770 0.45 +0.6 2,923,737 + HP15_2770 0.48 +1.5 2,923,849 + HP15_2770 0.57 -2.3 2,923,858 + HP15_2770 0.58 -1.7 2,923,858 + HP15_2770 0.58 -1.0 2,923,863 + HP15_2770 0.58 -1.1 2,923,871 + HP15_2770 0.59 -0.4 2,923,895 + HP15_2770 0.61 -0.0 2,923,919 - HP15_2770 0.62 -1.2 2,923,929 - HP15_2770 0.63 +0.4 2,923,975 + HP15_2770 0.67 +1.7 2,923,975 + HP15_2770 0.67 +1.6 2,923,983 - HP15_2770 0.67 +0.8 2,923,988 - HP15_2770 0.68 +0.6 2,923,990 + HP15_2770 0.68 -0.4 2,923,990 + HP15_2770 0.68 +0.1 2,924,025 - HP15_2770 0.71 -0.0 2,924,085 - HP15_2770 0.75 -0.7 2,924,206 - HP15_2770 0.85 -0.8 2,924,213 + HP15_2770 0.85 +1.8 2,924,283 - +1.7 2,924,323 + -0.7 2,924,331 - -0.5 2,924,423 + -0.6 2,924,423 + -0.7 2,924,430 - +1.6 2,924,430 - +2.1 2,924,495 + HP15_2771 0.15 -0.1 2,924,532 + HP15_2771 0.21 +0.9 2,924,611 - HP15_2771 0.34 -1.4 2,924,676 + HP15_2771 0.44 +1.4 2,924,684 + HP15_2771 0.45 +2.1 2,924,697 + HP15_2771 0.47 +0.6 2,924,738 - HP15_2771 0.54 +0.1 2,924,738 - HP15_2771 0.54 +0.7 2,924,738 - HP15_2771 0.54 -0.1 2,924,786 + HP15_2771 0.62 +2.3 2,924,824 - HP15_2771 0.68 -0.4 2,924,875 + HP15_2771 0.76 +0.8 2,924,992 + +2.2 2,925,398 + HP15_2772 0.27 +0.2 2,925,423 + HP15_2772 0.29 -0.9 2,925,431 - HP15_2772 0.29 -1.6 2,925,460 + HP15_2772 0.32 -2.4 2,925,580 + HP15_2772 0.41 -1.8 2,925,616 - HP15_2772 0.44 +2.0 2,925,623 + HP15_2772 0.45 -0.5 2,925,631 - HP15_2772 0.45 -1.9 2,925,691 - HP15_2772 0.50 +0.5 2,925,787 + HP15_2772 0.58 +0.1
Or see this region's nucleotide sequence