Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2752 and HP15_2753 are separated by 68 nucleotides HP15_2753 and HP15_2754 are separated by 227 nucleotides HP15_2754 and HP15_2755 overlap by 4 nucleotides
HP15_2752: HP15_2752 - glutathione-regulated potassium-efflux system protein kefC, at 2,906,092 to 2,907,975
_2752
HP15_2753: HP15_2753 - transcriptional regulator protein, LysR family, at 2,908,044 to 2,908,904
_2753
HP15_2754: HP15_2754 - conserved hypothetical protein, at 2,909,132 to 2,909,371
_2754
HP15_2755: HP15_2755 - homocysteine S-methyltransferase family protein, at 2,909,368 to 2,910,273
_2755
Position (kb)
2908
2909 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2907.055 kb on - strand, within HP15_2752 at 2907.060 kb on + strand, within HP15_2752 at 2907.125 kb on + strand, within HP15_2752 at 2907.170 kb on + strand, within HP15_2752 at 2907.232 kb on + strand, within HP15_2752 at 2907.240 kb on - strand, within HP15_2752 at 2907.282 kb on - strand, within HP15_2752 at 2907.376 kb on - strand, within HP15_2752 at 2907.440 kb on - strand, within HP15_2752 at 2907.452 kb on + strand, within HP15_2752 at 2907.533 kb on - strand, within HP15_2752 at 2907.559 kb on + strand, within HP15_2752 at 2907.624 kb on - strand, within HP15_2752 at 2907.640 kb on + strand, within HP15_2752 at 2907.654 kb on - strand, within HP15_2752 at 2907.671 kb on + strand, within HP15_2752 at 2907.699 kb on + strand, within HP15_2752 at 2907.826 kb on - strand at 2907.893 kb on - strand at 2907.916 kb on + strand at 2907.924 kb on - strand at 2908.099 kb on - strand at 2908.108 kb on - strand at 2908.226 kb on + strand, within HP15_2753 at 2908.246 kb on + strand, within HP15_2753 at 2908.260 kb on + strand, within HP15_2753 at 2908.272 kb on + strand, within HP15_2753 at 2908.296 kb on - strand, within HP15_2753 at 2908.426 kb on - strand, within HP15_2753 at 2908.464 kb on + strand, within HP15_2753 at 2908.472 kb on - strand, within HP15_2753 at 2908.473 kb on - strand, within HP15_2753 at 2908.473 kb on - strand, within HP15_2753 at 2908.796 kb on + strand, within HP15_2753 at 2908.877 kb on + strand at 2909.159 kb on - strand, within HP15_2754 at 2909.338 kb on + strand, within HP15_2754 at 2909.622 kb on + strand, within HP15_2755 at 2909.622 kb on + strand, within HP15_2755 at 2909.623 kb on - strand, within HP15_2755 at 2909.734 kb on + strand, within HP15_2755 at 2909.747 kb on - strand, within HP15_2755 at 2909.791 kb on - strand, within HP15_2755 at 2909.796 kb on - strand, within HP15_2755 at 2909.796 kb on - strand, within HP15_2755 at 2909.883 kb on - strand, within HP15_2755
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 2,907,055 - HP15_2752 0.51 -0.4 2,907,060 + HP15_2752 0.51 -0.8 2,907,125 + HP15_2752 0.55 -1.7 2,907,170 + HP15_2752 0.57 +1.8 2,907,232 + HP15_2752 0.61 +1.0 2,907,240 - HP15_2752 0.61 +0.2 2,907,282 - HP15_2752 0.63 -0.8 2,907,376 - HP15_2752 0.68 -1.0 2,907,440 - HP15_2752 0.72 -1.7 2,907,452 + HP15_2752 0.72 -1.4 2,907,533 - HP15_2752 0.76 -2.0 2,907,559 + HP15_2752 0.78 +0.8 2,907,624 - HP15_2752 0.81 -1.5 2,907,640 + HP15_2752 0.82 -2.0 2,907,654 - HP15_2752 0.83 +0.7 2,907,671 + HP15_2752 0.84 -0.2 2,907,699 + HP15_2752 0.85 -0.5 2,907,826 - -0.7 2,907,893 - -1.2 2,907,916 + +0.0 2,907,924 - -1.3 2,908,099 - +0.9 2,908,108 - -2.3 2,908,226 + HP15_2753 0.21 +0.1 2,908,246 + HP15_2753 0.23 -3.3 2,908,260 + HP15_2753 0.25 -1.3 2,908,272 + HP15_2753 0.26 +1.6 2,908,296 - HP15_2753 0.29 +2.5 2,908,426 - HP15_2753 0.44 -0.3 2,908,464 + HP15_2753 0.49 -0.6 2,908,472 - HP15_2753 0.50 -0.9 2,908,473 - HP15_2753 0.50 +1.6 2,908,473 - HP15_2753 0.50 +2.4 2,908,796 + HP15_2753 0.87 +0.3 2,908,877 + -0.6 2,909,159 - HP15_2754 0.11 +0.4 2,909,338 + HP15_2754 0.86 +0.3 2,909,622 + HP15_2755 0.28 -1.0 2,909,622 + HP15_2755 0.28 +0.2 2,909,623 - HP15_2755 0.28 -0.3 2,909,734 + HP15_2755 0.40 +1.4 2,909,747 - HP15_2755 0.42 -1.8 2,909,791 - HP15_2755 0.47 +0.1 2,909,796 - HP15_2755 0.47 -2.0 2,909,796 - HP15_2755 0.47 +0.2 2,909,883 - HP15_2755 0.57 -2.2
Or see this region's nucleotide sequence