Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2697 and HP15_2698 are separated by 17 nucleotides HP15_2698 and HP15_2699 are separated by 12 nucleotides HP15_2699 and HP15_2700 overlap by 17 nucleotides HP15_2700 and HP15_2701 are separated by 13 nucleotides
HP15_2697: HP15_2697 - phenylacetate-CoA oxygenase, PaaG subunit, at 2,850,022 to 2,851,014
_2697
HP15_2698: HP15_2698 - phenylacetate-CoA oxygenase, PaaH subunit, at 2,851,032 to 2,851,313
_2698
HP15_2699: HP15_2699 - phenylacetate-CoA oxygenase, PaaI subunit, at 2,851,326 to 2,852,090
_2699
HP15_2700: HP15_2700 - phenylacetate-CoA oxygenase, PaaJ subunit, at 2,852,074 to 2,852,643
_2700
HP15_2701: HP15_2701 - phenylacetic acid degradation oxidoreductase PaaK, at 2,852,657 to 2,853,736
_2701
Position (kb)
2851
2852
2853 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2850.923 kb on - strand at 2850.967 kb on + strand at 2851.100 kb on - strand, within HP15_2698 at 2851.178 kb on - strand, within HP15_2698 at 2851.307 kb on + strand at 2851.315 kb on - strand at 2851.315 kb on - strand at 2851.356 kb on + strand at 2851.453 kb on + strand, within HP15_2699 at 2851.592 kb on + strand, within HP15_2699 at 2851.939 kb on - strand, within HP15_2699 at 2851.959 kb on - strand, within HP15_2699 at 2851.988 kb on + strand, within HP15_2699 at 2852.037 kb on - strand at 2852.207 kb on - strand, within HP15_2700 at 2852.231 kb on - strand, within HP15_2700 at 2852.301 kb on - strand, within HP15_2700 at 2852.590 kb on - strand at 2852.850 kb on + strand, within HP15_2701 at 2853.032 kb on - strand, within HP15_2701
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 2,850,923 - +2.2 2,850,967 + +2.3 2,851,100 - HP15_2698 0.24 -2.8 2,851,178 - HP15_2698 0.52 -0.9 2,851,307 + -0.4 2,851,315 - +2.5 2,851,315 - +0.2 2,851,356 + -1.4 2,851,453 + HP15_2699 0.17 +0.3 2,851,592 + HP15_2699 0.35 -0.4 2,851,939 - HP15_2699 0.80 -2.2 2,851,959 - HP15_2699 0.83 +0.6 2,851,988 + HP15_2699 0.87 -1.4 2,852,037 - -1.7 2,852,207 - HP15_2700 0.23 +0.6 2,852,231 - HP15_2700 0.28 +1.3 2,852,301 - HP15_2700 0.40 +0.7 2,852,590 - +0.4 2,852,850 + HP15_2701 0.18 +0.7 2,853,032 - HP15_2701 0.35 -1.0
Or see this region's nucleotide sequence