Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_272 and HP15_273 are separated by 178 nucleotides HP15_273 and HP15_274 are separated by 65 nucleotides
HP15_272: HP15_272 - biosynthetic arginine decarboxylase, at 262,985 to 264,895
_272
HP15_273: HP15_273 - spermidine synthase, at 265,074 to 265,955
_273
HP15_274: HP15_274 - ammonium/methylammonium permease, at 266,021 to 267,304
_274
Position (kb) 265
266 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 264.092 kb on + strand, within HP15_272 at 264.092 kb on + strand, within HP15_272 at 264.105 kb on + strand, within HP15_272 at 264.149 kb on + strand, within HP15_272 at 264.167 kb on + strand, within HP15_272 at 264.342 kb on - strand, within HP15_272 at 264.514 kb on + strand, within HP15_272 at 264.629 kb on + strand, within HP15_272 at 264.658 kb on - strand, within HP15_272 at 264.712 kb on - strand at 264.842 kb on + strand at 264.862 kb on - strand at 264.919 kb on - strand at 265.208 kb on - strand, within HP15_273 at 265.301 kb on - strand, within HP15_273 at 265.400 kb on + strand, within HP15_273 at 265.465 kb on + strand, within HP15_273 at 265.524 kb on + strand, within HP15_273 at 265.542 kb on - strand, within HP15_273 at 265.542 kb on - strand, within HP15_273 at 265.707 kb on + strand, within HP15_273 at 265.722 kb on + strand, within HP15_273 at 265.731 kb on - strand, within HP15_273 at 265.734 kb on + strand, within HP15_273 at 265.742 kb on - strand, within HP15_273 at 265.782 kb on + strand, within HP15_273 at 265.789 kb on - strand, within HP15_273 at 265.895 kb on + strand at 265.958 kb on - strand at 266.036 kb on + strand at 266.051 kb on + strand at 266.074 kb on + strand at 266.153 kb on + strand, within HP15_274 at 266.384 kb on + strand, within HP15_274 at 266.477 kb on - strand, within HP15_274 at 266.482 kb on - strand, within HP15_274 at 266.482 kb on - strand, within HP15_274 at 266.686 kb on - strand, within HP15_274 at 266.714 kb on + strand, within HP15_274 at 266.758 kb on - strand, within HP15_274 at 266.769 kb on + strand, within HP15_274 at 266.769 kb on + strand, within HP15_274 at 266.797 kb on - strand, within HP15_274 at 266.881 kb on - strand, within HP15_274
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 264,092 + HP15_272 0.58 -2.5 264,092 + HP15_272 0.58 -1.7 264,105 + HP15_272 0.59 -3.6 264,149 + HP15_272 0.61 -0.6 264,167 + HP15_272 0.62 +1.5 264,342 - HP15_272 0.71 +3.7 264,514 + HP15_272 0.80 -3.5 264,629 + HP15_272 0.86 -1.4 264,658 - HP15_272 0.88 +0.7 264,712 - -2.3 264,842 + -2.5 264,862 - -2.3 264,919 - +0.2 265,208 - HP15_273 0.15 -3.8 265,301 - HP15_273 0.26 -2.4 265,400 + HP15_273 0.37 +1.0 265,465 + HP15_273 0.44 +1.0 265,524 + HP15_273 0.51 -3.3 265,542 - HP15_273 0.53 -2.7 265,542 - HP15_273 0.53 +0.8 265,707 + HP15_273 0.72 -3.6 265,722 + HP15_273 0.73 -1.8 265,731 - HP15_273 0.74 -1.2 265,734 + HP15_273 0.75 -3.0 265,742 - HP15_273 0.76 +3.3 265,782 + HP15_273 0.80 -0.3 265,789 - HP15_273 0.81 -3.5 265,895 + +0.9 265,958 - -0.0 266,036 + -1.6 266,051 + -3.3 266,074 + -1.0 266,153 + HP15_274 0.10 -1.7 266,384 + HP15_274 0.28 +1.7 266,477 - HP15_274 0.36 -2.4 266,482 - HP15_274 0.36 -1.5 266,482 - HP15_274 0.36 -1.2 266,686 - HP15_274 0.52 -2.0 266,714 + HP15_274 0.54 -2.7 266,758 - HP15_274 0.57 -0.9 266,769 + HP15_274 0.58 -2.9 266,769 + HP15_274 0.58 -2.4 266,797 - HP15_274 0.60 -3.6 266,881 - HP15_274 0.67 -1.8
Or see this region's nucleotide sequence