Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_259 and HP15_261 are separated by 101 nucleotides HP15_261 and HP15_260 are separated by 18 nucleotides HP15_260 and HP15_262 are separated by 101 nucleotides
HP15_259: HP15_259 - AraC-type DNA-binding domain-containing protein, at 249,773 to 250,849
_259
HP15_261: HP15_261 - hypothetical protein, at 250,951 to 251,220
_261
HP15_260: HP15_260 - hydrolase, alpha/beta fold family protein, at 251,239 to 252,036
_260
HP15_262: HP15_262 - strictosidine synthase family protein, at 252,138 to 253,223
_262
Position (kb) 251
252
253 Strain fitness (log2 ratio) -2
-1
0
1
2 at 250.397 kb on + strand, within HP15_259 at 250.405 kb on - strand, within HP15_259 at 250.528 kb on + strand, within HP15_259 at 250.554 kb on - strand, within HP15_259 at 250.808 kb on + strand at 250.813 kb on + strand at 250.816 kb on - strand at 250.816 kb on - strand at 250.831 kb on - strand at 250.876 kb on - strand at 250.911 kb on + strand at 251.187 kb on + strand, within HP15_261 at 251.195 kb on - strand at 251.210 kb on + strand at 251.235 kb on + strand at 251.311 kb on + strand at 251.322 kb on + strand, within HP15_260 at 251.575 kb on - strand, within HP15_260 at 251.605 kb on + strand, within HP15_260 at 251.624 kb on + strand, within HP15_260 at 251.629 kb on + strand, within HP15_260 at 251.637 kb on - strand, within HP15_260 at 251.670 kb on + strand, within HP15_260 at 251.832 kb on + strand, within HP15_260 at 251.832 kb on + strand, within HP15_260 at 251.941 kb on - strand, within HP15_260 at 251.965 kb on - strand at 251.993 kb on - strand at 252.044 kb on - strand at 252.044 kb on - strand at 252.085 kb on - strand at 252.179 kb on + strand at 252.187 kb on - strand at 252.319 kb on + strand, within HP15_262 at 252.361 kb on - strand, within HP15_262 at 252.469 kb on + strand, within HP15_262 at 252.519 kb on + strand, within HP15_262 at 252.681 kb on - strand, within HP15_262 at 252.793 kb on - strand, within HP15_262 at 252.909 kb on + strand, within HP15_262 at 252.958 kb on - strand, within HP15_262 at 253.007 kb on - strand, within HP15_262
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 250,397 + HP15_259 0.58 +1.1 250,405 - HP15_259 0.59 +1.2 250,528 + HP15_259 0.70 -0.4 250,554 - HP15_259 0.73 +1.1 250,808 + -2.1 250,813 + +1.8 250,816 - +0.7 250,816 - +0.6 250,831 - -0.9 250,876 - +0.2 250,911 + +1.2 251,187 + HP15_261 0.87 -0.6 251,195 - -0.7 251,210 + -2.1 251,235 + +0.1 251,311 + +2.2 251,322 + HP15_260 0.10 -2.7 251,575 - HP15_260 0.42 -0.4 251,605 + HP15_260 0.46 -1.1 251,624 + HP15_260 0.48 +0.1 251,629 + HP15_260 0.49 -1.2 251,637 - HP15_260 0.50 -1.1 251,670 + HP15_260 0.54 -2.2 251,832 + HP15_260 0.74 -1.3 251,832 + HP15_260 0.74 -2.1 251,941 - HP15_260 0.88 -1.4 251,965 - -1.7 251,993 - -1.5 252,044 - +0.7 252,044 - -0.8 252,085 - +0.3 252,179 + -0.6 252,187 - -0.4 252,319 + HP15_262 0.17 -0.8 252,361 - HP15_262 0.21 +1.4 252,469 + HP15_262 0.30 +0.5 252,519 + HP15_262 0.35 +1.0 252,681 - HP15_262 0.50 -0.2 252,793 - HP15_262 0.60 -0.2 252,909 + HP15_262 0.71 -0.6 252,958 - HP15_262 0.76 -0.1 253,007 - HP15_262 0.80 -1.0
Or see this region's nucleotide sequence