Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2348 and HP15_2349 are separated by 260 nucleotides HP15_2349 and HP15_2350 are separated by 17 nucleotides HP15_2350 and HP15_2351 are separated by 71 nucleotides HP15_2351 and HP15_2352 are separated by 284 nucleotides
HP15_2348: HP15_2348 - conserved hypothetical protein, at 2,471,648 to 2,472,628
_2348
HP15_2349: HP15_2349 - phosphoribosylaminoimidazole carboxylase catalytic subunit, at 2,472,889 to 2,473,416
_2349
HP15_2350: HP15_2350 - phosphoribosylaminoimidazole carboxylase ATPase subunit, at 2,473,434 to 2,474,552
_2350
HP15_2351: HP15_2351 - superoxide dismutase, Fe, at 2,474,624 to 2,475,202
_2351
HP15_2352: HP15_2352 - sensory box sensor/GGDEF/EAL domain protein, at 2,475,487 to 2,477,547
_2352
Position (kb)
2473
2474
2475 Strain fitness (log2 ratio)
-1
0
1
2 at 2472.599 kb on - strand at 2472.668 kb on + strand at 2472.749 kb on - strand at 2473.394 kb on + strand at 2474.546 kb on + strand at 2474.554 kb on - strand at 2475.244 kb on - strand at 2475.361 kb on + strand at 2475.427 kb on + strand at 2475.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 2,472,599 - -0.1 2,472,668 + +1.4 2,472,749 - -1.3 2,473,394 + +2.1 2,474,546 + -0.2 2,474,554 - -1.3 2,475,244 - +0.1 2,475,361 + -0.7 2,475,427 + +1.4 2,475,440 - +1.8
Or see this region's nucleotide sequence