Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_228 and HP15_227 overlap by 2 nucleotides HP15_227 and HP15_229 are separated by 256 nucleotides HP15_229 and HP15_230 are separated by 64 nucleotides
HP15_228: HP15_228 - guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 213,124 to 214,566
_228
HP15_227: HP15_227 - hypothetical protein, at 214,565 to 214,669
_227
HP15_229: HP15_229 - thioredoxin, at 214,926 to 215,270
_229
HP15_230: HP15_230 - molybdenum cofactor biosynthesis protein E, at 215,335 to 215,781
_230
Position (kb) 214
215 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 213.582 kb on - strand, within HP15_228 at 213.672 kb on + strand, within HP15_228 at 213.858 kb on - strand, within HP15_228 at 213.872 kb on + strand, within HP15_228 at 213.921 kb on + strand, within HP15_228 at 213.924 kb on + strand, within HP15_228 at 213.929 kb on - strand, within HP15_228 at 214.034 kb on + strand, within HP15_228 at 214.060 kb on + strand, within HP15_228 at 214.242 kb on + strand, within HP15_228 at 214.254 kb on + strand, within HP15_228 at 214.289 kb on + strand, within HP15_228 at 214.332 kb on - strand, within HP15_228 at 214.406 kb on + strand, within HP15_228 at 214.414 kb on - strand, within HP15_228 at 214.414 kb on - strand, within HP15_228 at 214.446 kb on - strand at 214.651 kb on - strand, within HP15_227 at 214.743 kb on + strand at 214.767 kb on - strand at 214.778 kb on + strand at 214.802 kb on + strand at 214.871 kb on - strand at 215.032 kb on - strand, within HP15_229 at 215.397 kb on - strand, within HP15_230 at 215.441 kb on - strand, within HP15_230 at 215.482 kb on - strand, within HP15_230 at 215.486 kb on + strand, within HP15_230 at 215.500 kb on + strand, within HP15_230 at 215.523 kb on + strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.531 kb on - strand, within HP15_230 at 215.575 kb on - strand, within HP15_230 at 215.575 kb on - strand, within HP15_230
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 213,582 - HP15_228 0.32 +0.3 213,672 + HP15_228 0.38 -2.6 213,858 - HP15_228 0.51 -5.0 213,872 + HP15_228 0.52 -0.1 213,921 + HP15_228 0.55 -2.2 213,924 + HP15_228 0.55 -2.3 213,929 - HP15_228 0.56 -3.1 214,034 + HP15_228 0.63 +1.3 214,060 + HP15_228 0.65 +0.3 214,242 + HP15_228 0.77 -3.6 214,254 + HP15_228 0.78 -1.1 214,289 + HP15_228 0.81 +1.1 214,332 - HP15_228 0.84 +2.9 214,406 + HP15_228 0.89 +0.4 214,414 - HP15_228 0.89 -2.4 214,414 - HP15_228 0.89 -0.8 214,446 - +1.0 214,651 - HP15_227 0.82 -1.3 214,743 + +0.9 214,767 - +0.7 214,778 + -0.4 214,802 + -2.0 214,871 - -0.7 215,032 - HP15_229 0.31 +1.9 215,397 - HP15_230 0.14 +0.6 215,441 - HP15_230 0.24 -2.3 215,482 - HP15_230 0.33 -3.2 215,486 + HP15_230 0.34 -1.5 215,500 + HP15_230 0.37 -0.3 215,523 + HP15_230 0.42 -0.7 215,531 - HP15_230 0.44 -0.9 215,531 - HP15_230 0.44 -0.2 215,531 - HP15_230 0.44 +0.3 215,575 - HP15_230 0.54 +2.1 215,575 - HP15_230 0.54 -1.3
Or see this region's nucleotide sequence