Strain Fitness in Marinobacter adhaerens HP15 around HP15_2207

Experiment: monoculture; Experiment B, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2206 and HP15_2207 are separated by 100 nucleotidesHP15_2207 and HP15_2208 overlap by 4 nucleotides HP15_2206: HP15_2206 - AraC-type DNA-binding domain-containing protein, at 2,325,712 to 2,326,491 _2206 HP15_2207: HP15_2207 - thymidylate kinase, at 2,326,592 to 2,327,233 _2207 HP15_2208: HP15_2208 - aminodeoxychorismate lyase, at 2,327,230 to 2,328,204 _2208 Position (kb) 2326 2327 2328Strain fitness (log2 ratio) -2 -1 0 1 2at 2325.613 kb on - strandat 2325.781 kb on - strandat 2325.781 kb on - strandat 2325.864 kb on + strand, within HP15_2206at 2325.871 kb on - strand, within HP15_2206at 2325.873 kb on - strand, within HP15_2206at 2325.897 kb on + strand, within HP15_2206at 2325.904 kb on - strand, within HP15_2206at 2326.020 kb on + strand, within HP15_2206at 2326.028 kb on - strand, within HP15_2206at 2326.041 kb on + strand, within HP15_2206at 2326.041 kb on + strand, within HP15_2206at 2326.041 kb on + strand, within HP15_2206at 2326.049 kb on - strand, within HP15_2206at 2326.082 kb on + strand, within HP15_2206at 2326.096 kb on + strand, within HP15_2206at 2326.127 kb on - strand, within HP15_2206at 2326.245 kb on + strand, within HP15_2206at 2326.283 kb on - strand, within HP15_2206at 2326.353 kb on + strand, within HP15_2206at 2326.372 kb on + strand, within HP15_2206at 2326.393 kb on + strand, within HP15_2206at 2326.465 kb on - strandat 2327.395 kb on - strand, within HP15_2208

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7
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2,325,613 - -1.2
2,325,781 - -1.0
2,325,781 - +0.5
2,325,864 + HP15_2206 0.19 -2.6
2,325,871 - HP15_2206 0.20 -2.3
2,325,873 - HP15_2206 0.21 -1.9
2,325,897 + HP15_2206 0.24 +2.6
2,325,904 - HP15_2206 0.25 -1.7
2,326,020 + HP15_2206 0.39 +1.7
2,326,028 - HP15_2206 0.41 -0.4
2,326,041 + HP15_2206 0.42 +0.2
2,326,041 + HP15_2206 0.42 +1.7
2,326,041 + HP15_2206 0.42 +0.3
2,326,049 - HP15_2206 0.43 -0.7
2,326,082 + HP15_2206 0.47 -0.8
2,326,096 + HP15_2206 0.49 +2.0
2,326,127 - HP15_2206 0.53 +1.3
2,326,245 + HP15_2206 0.68 +1.6
2,326,283 - HP15_2206 0.73 +1.8
2,326,353 + HP15_2206 0.82 +1.9
2,326,372 + HP15_2206 0.85 +0.8
2,326,393 + HP15_2206 0.87 -0.9
2,326,465 - -0.1
2,327,395 - HP15_2208 0.17 +0.0

Or see this region's nucleotide sequence