Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1919 and HP15_1920 overlap by 7 nucleotides HP15_1920 and HP15_1921 are separated by 29 nucleotides
HP15_1919: HP15_1919 - protein involved in cellulose biosynthesis (CelD)-like protein, at 2,034,569 to 2,035,693
_1919
HP15_1920: HP15_1920 - WalW protein, at 2,035,687 to 2,036,685
_1920
HP15_1921: HP15_1921 - conserved hypothetical protein, secreted, at 2,036,715 to 2,038,073
_1921
Position (kb)
2035
2036
2037 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2034.932 kb on + strand, within HP15_1919 at 2034.940 kb on - strand, within HP15_1919 at 2035.144 kb on + strand, within HP15_1919 at 2035.154 kb on + strand, within HP15_1919 at 2035.197 kb on - strand, within HP15_1919 at 2035.386 kb on - strand, within HP15_1919 at 2035.388 kb on + strand, within HP15_1919 at 2035.480 kb on + strand, within HP15_1919 at 2035.488 kb on - strand, within HP15_1919 at 2035.853 kb on - strand, within HP15_1920 at 2036.018 kb on + strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.195 kb on - strand, within HP15_1920 at 2036.260 kb on - strand, within HP15_1920 at 2036.298 kb on + strand, within HP15_1920 at 2036.551 kb on + strand, within HP15_1920 at 2036.624 kb on + strand at 2036.711 kb on - strand at 2036.783 kb on - strand at 2036.800 kb on - strand at 2036.897 kb on - strand, within HP15_1921 at 2036.950 kb on - strand, within HP15_1921 at 2037.192 kb on + strand, within HP15_1921 at 2037.249 kb on - strand, within HP15_1921 at 2037.487 kb on + strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.495 kb on - strand, within HP15_1921 at 2037.520 kb on + strand, within HP15_1921 at 2037.548 kb on + strand, within HP15_1921 at 2037.548 kb on + strand, within HP15_1921 at 2037.556 kb on - strand, within HP15_1921 at 2037.566 kb on - strand, within HP15_1921 at 2037.579 kb on + strand, within HP15_1921 at 2037.579 kb on + strand, within HP15_1921 at 2037.587 kb on - strand, within HP15_1921 at 2037.606 kb on + strand, within HP15_1921 at 2037.670 kb on + strand, within HP15_1921
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 2,034,932 + HP15_1919 0.32 -2.1 2,034,940 - HP15_1919 0.33 -0.6 2,035,144 + HP15_1919 0.51 -0.1 2,035,154 + HP15_1919 0.52 -0.5 2,035,197 - HP15_1919 0.56 -0.4 2,035,386 - HP15_1919 0.73 -2.1 2,035,388 + HP15_1919 0.73 -2.1 2,035,480 + HP15_1919 0.81 -0.7 2,035,488 - HP15_1919 0.82 -2.0 2,035,853 - HP15_1920 0.17 +0.6 2,036,018 + HP15_1920 0.33 -0.7 2,036,031 - HP15_1920 0.34 +0.2 2,036,031 - HP15_1920 0.34 -2.1 2,036,031 - HP15_1920 0.34 -0.3 2,036,195 - HP15_1920 0.51 -0.1 2,036,260 - HP15_1920 0.57 -0.1 2,036,298 + HP15_1920 0.61 -0.6 2,036,551 + HP15_1920 0.86 -0.8 2,036,624 + -0.1 2,036,711 - +0.1 2,036,783 - -0.5 2,036,800 - -0.0 2,036,897 - HP15_1921 0.13 +1.9 2,036,950 - HP15_1921 0.17 -0.3 2,037,192 + HP15_1921 0.35 -0.4 2,037,249 - HP15_1921 0.39 -1.3 2,037,487 + HP15_1921 0.57 -0.6 2,037,495 - HP15_1921 0.57 +1.9 2,037,495 - HP15_1921 0.57 -0.1 2,037,495 - HP15_1921 0.57 +1.5 2,037,495 - HP15_1921 0.57 +0.3 2,037,495 - HP15_1921 0.57 +2.0 2,037,495 - HP15_1921 0.57 +1.7 2,037,520 + HP15_1921 0.59 -3.2 2,037,548 + HP15_1921 0.61 +1.3 2,037,548 + HP15_1921 0.61 -0.3 2,037,556 - HP15_1921 0.62 +0.5 2,037,566 - HP15_1921 0.63 +0.4 2,037,579 + HP15_1921 0.64 -0.7 2,037,579 + HP15_1921 0.64 -2.9 2,037,587 - HP15_1921 0.64 -0.4 2,037,606 + HP15_1921 0.66 -0.2 2,037,670 + HP15_1921 0.70 -0.9
Or see this region's nucleotide sequence