Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1918 and HP15_1919 overlap by 1 nucleotides HP15_1919 and HP15_1920 overlap by 7 nucleotides
HP15_1918: HP15_1918 - PEP-CTERM system-associated, FemAB-related protein, at 2,033,508 to 2,034,569
_1918
HP15_1919: HP15_1919 - protein involved in cellulose biosynthesis (CelD)-like protein, at 2,034,569 to 2,035,693
_1919
HP15_1920: HP15_1920 - WalW protein, at 2,035,687 to 2,036,685
_1920
Position (kb)
2034
2035
2036 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2033.685 kb on - strand, within HP15_1918 at 2033.876 kb on - strand, within HP15_1918 at 2033.877 kb on + strand, within HP15_1918 at 2033.936 kb on + strand, within HP15_1918 at 2033.944 kb on - strand, within HP15_1918 at 2034.036 kb on - strand, within HP15_1918 at 2034.176 kb on - strand, within HP15_1918 at 2034.426 kb on + strand, within HP15_1918 at 2034.434 kb on - strand, within HP15_1918 at 2034.513 kb on + strand at 2034.526 kb on + strand at 2034.628 kb on + strand at 2034.628 kb on + strand at 2034.632 kb on + strand at 2034.634 kb on + strand at 2034.636 kb on - strand at 2034.644 kb on + strand at 2034.932 kb on + strand, within HP15_1919 at 2034.940 kb on - strand, within HP15_1919 at 2035.144 kb on + strand, within HP15_1919 at 2035.154 kb on + strand, within HP15_1919 at 2035.197 kb on - strand, within HP15_1919 at 2035.386 kb on - strand, within HP15_1919 at 2035.388 kb on + strand, within HP15_1919 at 2035.480 kb on + strand, within HP15_1919 at 2035.488 kb on - strand, within HP15_1919 at 2035.853 kb on - strand, within HP15_1920 at 2036.018 kb on + strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.031 kb on - strand, within HP15_1920 at 2036.195 kb on - strand, within HP15_1920 at 2036.260 kb on - strand, within HP15_1920 at 2036.298 kb on + strand, within HP15_1920 at 2036.551 kb on + strand, within HP15_1920 at 2036.624 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 2,033,685 - HP15_1918 0.17 +0.9 2,033,876 - HP15_1918 0.35 +0.6 2,033,877 + HP15_1918 0.35 -0.2 2,033,936 + HP15_1918 0.40 +0.2 2,033,944 - HP15_1918 0.41 -0.6 2,034,036 - HP15_1918 0.50 -0.4 2,034,176 - HP15_1918 0.63 +2.0 2,034,426 + HP15_1918 0.86 +0.8 2,034,434 - HP15_1918 0.87 +2.2 2,034,513 + +0.1 2,034,526 + +0.4 2,034,628 + -1.5 2,034,628 + -0.5 2,034,632 + +0.6 2,034,634 + -0.3 2,034,636 - +1.1 2,034,644 + +2.9 2,034,932 + HP15_1919 0.32 -2.1 2,034,940 - HP15_1919 0.33 -0.6 2,035,144 + HP15_1919 0.51 -0.1 2,035,154 + HP15_1919 0.52 -0.5 2,035,197 - HP15_1919 0.56 -0.4 2,035,386 - HP15_1919 0.73 -2.1 2,035,388 + HP15_1919 0.73 -2.1 2,035,480 + HP15_1919 0.81 -0.7 2,035,488 - HP15_1919 0.82 -2.0 2,035,853 - HP15_1920 0.17 +0.6 2,036,018 + HP15_1920 0.33 -0.7 2,036,031 - HP15_1920 0.34 +0.2 2,036,031 - HP15_1920 0.34 -2.1 2,036,031 - HP15_1920 0.34 -0.3 2,036,195 - HP15_1920 0.51 -0.1 2,036,260 - HP15_1920 0.57 -0.1 2,036,298 + HP15_1920 0.61 -0.6 2,036,551 + HP15_1920 0.86 -0.8 2,036,624 + -0.1
Or see this region's nucleotide sequence