Strain Fitness in Marinobacter adhaerens HP15 around HP15_1907

Experiment: monoculture; Experiment B, time point 7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1905 and HP15_1906 are separated by 1 nucleotidesHP15_1906 and HP15_1907 are separated by 1 nucleotidesHP15_1907 and HP15_1908 are separated by 6 nucleotidesHP15_1908 and HP15_1909 are separated by 3 nucleotides HP15_1905: HP15_1905 - conserved hypothetical protein, at 2,014,616 to 2,017,165 _1905 HP15_1906: HP15_1906 - acetyltransferase-like protein, at 2,017,167 to 2,017,787 _1906 HP15_1907: HP15_1907 - coenzyme F390 synthetase-like protein, at 2,017,789 to 2,019,153 _1907 HP15_1908: HP15_1908 - glycosyl transferase, family 2, at 2,019,160 to 2,020,089 _1908 HP15_1909: HP15_1909 - fibronectin, type III domain protein-like protein, at 2,020,093 to 2,021,283 _1909 Position (kb) 2017 2018 2019 2020Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 2016.916 kb on - strandat 2017.012 kb on - strandat 2017.040 kb on + strandat 2017.064 kb on - strandat 2017.432 kb on + strand, within HP15_1906at 2017.501 kb on + strand, within HP15_1906at 2017.553 kb on - strand, within HP15_1906at 2017.657 kb on - strand, within HP15_1906at 2017.662 kb on - strand, within HP15_1906at 2017.662 kb on - strand, within HP15_1906at 2017.672 kb on - strand, within HP15_1906at 2017.674 kb on + strand, within HP15_1906at 2017.674 kb on + strand, within HP15_1906at 2017.692 kb on - strand, within HP15_1906at 2017.750 kb on - strandat 2017.843 kb on + strandat 2017.882 kb on - strandat 2017.913 kb on - strandat 2017.940 kb on - strand, within HP15_1907at 2018.110 kb on - strand, within HP15_1907at 2018.130 kb on + strand, within HP15_1907at 2018.191 kb on + strand, within HP15_1907at 2018.191 kb on + strand, within HP15_1907at 2018.191 kb on + strand, within HP15_1907at 2018.196 kb on + strand, within HP15_1907at 2018.196 kb on + strand, within HP15_1907at 2018.340 kb on + strand, within HP15_1907at 2018.835 kb on + strand, within HP15_1907at 2019.058 kb on + strandat 2019.142 kb on + strandat 2019.315 kb on + strand, within HP15_1908at 2019.364 kb on + strand, within HP15_1908at 2019.372 kb on - strand, within HP15_1908at 2019.489 kb on + strand, within HP15_1908at 2019.582 kb on + strand, within HP15_1908at 2019.582 kb on + strand, within HP15_1908at 2019.593 kb on + strand, within HP15_1908at 2019.685 kb on - strand, within HP15_1908at 2019.729 kb on - strand, within HP15_1908at 2019.827 kb on - strand, within HP15_1908at 2019.864 kb on + strand, within HP15_1908at 2019.907 kb on - strand, within HP15_1908at 2019.990 kb on - strand, within HP15_1908at 2020.117 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7
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2,016,916 - -0.9
2,017,012 - -1.8
2,017,040 + +0.3
2,017,064 - -0.7
2,017,432 + HP15_1906 0.43 -0.8
2,017,501 + HP15_1906 0.54 +0.9
2,017,553 - HP15_1906 0.62 -1.8
2,017,657 - HP15_1906 0.79 -0.4
2,017,662 - HP15_1906 0.80 -2.1
2,017,662 - HP15_1906 0.80 +0.7
2,017,672 - HP15_1906 0.81 +1.1
2,017,674 + HP15_1906 0.82 +1.2
2,017,674 + HP15_1906 0.82 +0.5
2,017,692 - HP15_1906 0.85 -0.4
2,017,750 - -1.3
2,017,843 + -2.8
2,017,882 - -3.1
2,017,913 - -4.8
2,017,940 - HP15_1907 0.11 -4.3
2,018,110 - HP15_1907 0.24 -3.6
2,018,130 + HP15_1907 0.25 -5.0
2,018,191 + HP15_1907 0.29 -2.6
2,018,191 + HP15_1907 0.29 -4.4
2,018,191 + HP15_1907 0.29 -3.5
2,018,196 + HP15_1907 0.30 -1.9
2,018,196 + HP15_1907 0.30 -5.8
2,018,340 + HP15_1907 0.40 -3.6
2,018,835 + HP15_1907 0.77 -4.1
2,019,058 + -5.3
2,019,142 + -1.3
2,019,315 + HP15_1908 0.17 +2.4
2,019,364 + HP15_1908 0.22 +3.1
2,019,372 - HP15_1908 0.23 -0.1
2,019,489 + HP15_1908 0.35 -1.7
2,019,582 + HP15_1908 0.45 +0.7
2,019,582 + HP15_1908 0.45 -1.7
2,019,593 + HP15_1908 0.47 +1.1
2,019,685 - HP15_1908 0.56 -2.3
2,019,729 - HP15_1908 0.61 +0.2
2,019,827 - HP15_1908 0.72 +0.4
2,019,864 + HP15_1908 0.76 +0.0
2,019,907 - HP15_1908 0.80 -1.0
2,019,990 - HP15_1908 0.89 +0.1
2,020,117 - +1.0

Or see this region's nucleotide sequence