Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_183 and HP15_184 are separated by 85 nucleotides HP15_184 and HP15_185 are separated by 203 nucleotides HP15_185 and HP15_186 overlap by 14 nucleotides
HP15_183: HP15_183 - copper-resistance protein, CopA family, at 173,011 to 174,771
_183
HP15_184: HP15_184 - copper-binding protein, at 174,857 to 175,384
_184
HP15_185: HP15_185 - two component transcriptional regulator, winged helix family, at 175,588 to 176,253
_185
HP15_186: HP15_186 - two-component sensor, at 176,240 to 177,595
_186
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 173.860 kb on + strand, within HP15_183 at 173.869 kb on + strand, within HP15_183 at 173.889 kb on + strand, within HP15_183 at 173.961 kb on - strand, within HP15_183 at 173.975 kb on - strand, within HP15_183 at 174.007 kb on + strand, within HP15_183 at 174.071 kb on + strand, within HP15_183 at 174.076 kb on + strand, within HP15_183 at 174.095 kb on + strand, within HP15_183 at 174.097 kb on - strand, within HP15_183 at 174.115 kb on + strand, within HP15_183 at 174.115 kb on + strand, within HP15_183 at 174.133 kb on - strand, within HP15_183 at 174.145 kb on - strand, within HP15_183 at 174.174 kb on + strand, within HP15_183 at 174.182 kb on + strand, within HP15_183 at 174.182 kb on + strand, within HP15_183 at 174.182 kb on + strand, within HP15_183 at 174.182 kb on + strand, within HP15_183 at 174.195 kb on - strand, within HP15_183 at 174.460 kb on + strand, within HP15_183 at 174.536 kb on - strand, within HP15_183 at 174.554 kb on - strand, within HP15_183 at 174.600 kb on - strand at 174.602 kb on + strand at 174.632 kb on + strand at 174.700 kb on + strand at 174.708 kb on - strand at 174.708 kb on - strand at 174.718 kb on + strand at 174.752 kb on + strand at 174.774 kb on + strand at 174.887 kb on + strand at 174.998 kb on + strand, within HP15_184 at 175.061 kb on + strand, within HP15_184 at 175.108 kb on - strand, within HP15_184 at 175.113 kb on - strand, within HP15_184 at 175.120 kb on + strand, within HP15_184 at 175.171 kb on - strand, within HP15_184 at 175.203 kb on - strand, within HP15_184 at 175.216 kb on + strand, within HP15_184 at 175.229 kb on + strand, within HP15_184 at 175.253 kb on - strand, within HP15_184 at 175.277 kb on - strand, within HP15_184 at 175.440 kb on - strand at 175.558 kb on - strand at 175.581 kb on - strand at 175.664 kb on + strand, within HP15_185 at 175.677 kb on - strand, within HP15_185 at 175.716 kb on + strand, within HP15_185 at 175.763 kb on + strand, within HP15_185 at 175.771 kb on - strand, within HP15_185 at 175.848 kb on + strand, within HP15_185 at 175.857 kb on + strand, within HP15_185 at 175.857 kb on - strand, within HP15_185 at 175.865 kb on - strand, within HP15_185 at 175.881 kb on - strand, within HP15_185 at 175.920 kb on + strand, within HP15_185 at 175.960 kb on - strand, within HP15_185 at 176.037 kb on - strand, within HP15_185 at 176.037 kb on - strand, within HP15_185 at 176.037 kb on - strand, within HP15_185 at 176.043 kb on - strand, within HP15_185 at 176.123 kb on + strand, within HP15_185 at 176.265 kb on - strand at 176.348 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 173,860 + HP15_183 0.48 -1.8 173,869 + HP15_183 0.49 +2.1 173,889 + HP15_183 0.50 +2.3 173,961 - HP15_183 0.54 +2.2 173,975 - HP15_183 0.55 -2.9 174,007 + HP15_183 0.57 -1.4 174,071 + HP15_183 0.60 -0.9 174,076 + HP15_183 0.60 -1.1 174,095 + HP15_183 0.62 -0.1 174,097 - HP15_183 0.62 -1.0 174,115 + HP15_183 0.63 -0.4 174,115 + HP15_183 0.63 +2.7 174,133 - HP15_183 0.64 +1.3 174,145 - HP15_183 0.64 +2.8 174,174 + HP15_183 0.66 +0.1 174,182 + HP15_183 0.66 +0.5 174,182 + HP15_183 0.66 -1.5 174,182 + HP15_183 0.66 -1.1 174,182 + HP15_183 0.66 +1.7 174,195 - HP15_183 0.67 +1.5 174,460 + HP15_183 0.82 -0.4 174,536 - HP15_183 0.87 +0.8 174,554 - HP15_183 0.88 -0.1 174,600 - +1.8 174,602 + +1.2 174,632 + +1.3 174,700 + +1.1 174,708 - -1.3 174,708 - -0.5 174,718 + -0.6 174,752 + -1.5 174,774 + +0.6 174,887 + -0.4 174,998 + HP15_184 0.27 +0.8 175,061 + HP15_184 0.39 +3.0 175,108 - HP15_184 0.48 -0.1 175,113 - HP15_184 0.48 -2.3 175,120 + HP15_184 0.50 +0.3 175,171 - HP15_184 0.59 -0.3 175,203 - HP15_184 0.66 +0.2 175,216 + HP15_184 0.68 +1.3 175,229 + HP15_184 0.70 -0.7 175,253 - HP15_184 0.75 +1.5 175,277 - HP15_184 0.80 -0.0 175,440 - -3.4 175,558 - +0.9 175,581 - +2.0 175,664 + HP15_185 0.11 -1.1 175,677 - HP15_185 0.13 +0.8 175,716 + HP15_185 0.19 +1.3 175,763 + HP15_185 0.26 +1.4 175,771 - HP15_185 0.27 +1.1 175,848 + HP15_185 0.39 -0.6 175,857 + HP15_185 0.40 +2.1 175,857 - HP15_185 0.40 -0.4 175,865 - HP15_185 0.42 +2.2 175,881 - HP15_185 0.44 -0.3 175,920 + HP15_185 0.50 +0.4 175,960 - HP15_185 0.56 +0.2 176,037 - HP15_185 0.67 +1.4 176,037 - HP15_185 0.67 -1.2 176,037 - HP15_185 0.67 +0.9 176,043 - HP15_185 0.68 -1.2 176,123 + HP15_185 0.80 -0.9 176,265 - +0.6 176,348 - -1.1
Or see this region's nucleotide sequence