Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1785 and HP15_1786 are separated by 2 nucleotides HP15_1786 and HP15_1787 are separated by 77 nucleotides HP15_1787 and HP15_1788 are separated by 3 nucleotides HP15_1788 and HP15_1789 overlap by 14 nucleotides HP15_1789 and HP15_1790 are separated by 41 nucleotides
HP15_1785: HP15_1785 - DsrE family protein, at 1,879,154 to 1,879,558
_1785
HP15_1786: HP15_1786 - DsrE family protein, at 1,879,561 to 1,879,911
_1786
HP15_1787: HP15_1787 - sulfur relay, TusB/DsrH-like protein, at 1,879,989 to 1,880,201
_1787
HP15_1788: HP15_1788 - DsrC-like protein, at 1,880,205 to 1,880,531
_1788
HP15_1789: HP15_1789 - conserved hypothetical protein, at 1,880,518 to 1,880,886
_1789
HP15_1790: HP15_1790 - conserved hypothetical protein, membrane, at 1,880,928 to 1,882,094
_1790
Position (kb)
1880
1881 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1880.577 kb on + strand, within HP15_1789 at 1880.609 kb on + strand, within HP15_1789 at 1880.736 kb on - strand, within HP15_1789 at 1880.764 kb on - strand, within HP15_1789 at 1880.895 kb on + strand at 1880.896 kb on + strand at 1880.896 kb on - strand at 1881.216 kb on - strand, within HP15_1790 at 1881.227 kb on + strand, within HP15_1790 at 1881.285 kb on + strand, within HP15_1790 at 1881.363 kb on + strand, within HP15_1790 at 1881.364 kb on + strand, within HP15_1790 at 1881.372 kb on - strand, within HP15_1790 at 1881.405 kb on + strand, within HP15_1790 at 1881.433 kb on - strand, within HP15_1790 at 1881.451 kb on + strand, within HP15_1790 at 1881.564 kb on - strand, within HP15_1790 at 1881.606 kb on - strand, within HP15_1790 at 1881.679 kb on + strand, within HP15_1790 at 1881.731 kb on + strand, within HP15_1790 at 1881.731 kb on + strand, within HP15_1790 at 1881.744 kb on + strand, within HP15_1790 at 1881.752 kb on + strand, within HP15_1790
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 1,880,577 + HP15_1789 0.16 +1.4 1,880,609 + HP15_1789 0.25 -0.1 1,880,736 - HP15_1789 0.59 +1.6 1,880,764 - HP15_1789 0.67 +0.6 1,880,895 + -1.2 1,880,896 + -0.4 1,880,896 - -0.3 1,881,216 - HP15_1790 0.25 -1.7 1,881,227 + HP15_1790 0.26 +2.5 1,881,285 + HP15_1790 0.31 +1.5 1,881,363 + HP15_1790 0.37 +1.9 1,881,364 + HP15_1790 0.37 -0.1 1,881,372 - HP15_1790 0.38 +1.4 1,881,405 + HP15_1790 0.41 +0.4 1,881,433 - HP15_1790 0.43 -0.1 1,881,451 + HP15_1790 0.45 -0.3 1,881,564 - HP15_1790 0.54 +2.0 1,881,606 - HP15_1790 0.58 +1.5 1,881,679 + HP15_1790 0.64 +0.1 1,881,731 + HP15_1790 0.69 -2.2 1,881,731 + HP15_1790 0.69 -0.4 1,881,744 + HP15_1790 0.70 -1.2 1,881,752 + HP15_1790 0.71 -0.2
Or see this region's nucleotide sequence