Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1540 and HP15_1541 are separated by 4 nucleotides HP15_1541 and HP15_1542 are separated by 24 nucleotides HP15_1542 and HP15_1543 overlap by 4 nucleotides
HP15_1540: HP15_1540 - protein YfcK, at 1,624,843 to 1,626,741
_1540
HP15_1541: HP15_1541 - peptidyl-prolyl cis-trans isomerase, cyclophilin type, at 1,626,746 to 1,627,357
_1541
HP15_1542: HP15_1542 - hypothetical protein, at 1,627,382 to 1,627,588
_1542
HP15_1543: HP15_1543 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,627,585 to 1,628,334
_1543
Position (kb)
1626
1627
1628 Strain fitness (log2 ratio)
-1
0
1
2 at 1625.892 kb on + strand, within HP15_1540 at 1626.121 kb on + strand, within HP15_1540 at 1626.140 kb on + strand, within HP15_1540 at 1626.146 kb on + strand, within HP15_1540 at 1626.146 kb on + strand, within HP15_1540 at 1626.337 kb on + strand, within HP15_1540 at 1626.345 kb on - strand, within HP15_1540 at 1626.345 kb on - strand, within HP15_1540 at 1626.345 kb on - strand, within HP15_1540 at 1626.384 kb on + strand, within HP15_1540 at 1626.417 kb on - strand, within HP15_1540 at 1626.533 kb on - strand, within HP15_1540 at 1626.646 kb on + strand at 1626.697 kb on - strand at 1626.707 kb on - strand at 1626.751 kb on - strand at 1626.858 kb on + strand, within HP15_1541 at 1626.900 kb on - strand, within HP15_1541 at 1627.230 kb on + strand, within HP15_1541 at 1627.247 kb on + strand, within HP15_1541 at 1627.483 kb on - strand, within HP15_1542 at 1627.499 kb on + strand, within HP15_1542 at 1627.665 kb on + strand, within HP15_1543 at 1627.684 kb on - strand, within HP15_1543 at 1627.685 kb on - strand, within HP15_1543 at 1627.740 kb on - strand, within HP15_1543 at 1627.779 kb on - strand, within HP15_1543 at 1627.808 kb on - strand, within HP15_1543 at 1628.139 kb on + strand, within HP15_1543 at 1628.242 kb on - strand, within HP15_1543 at 1628.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 1,625,892 + HP15_1540 0.55 +1.5 1,626,121 + HP15_1540 0.67 -0.3 1,626,140 + HP15_1540 0.68 +1.5 1,626,146 + HP15_1540 0.69 +0.8 1,626,146 + HP15_1540 0.69 +1.5 1,626,337 + HP15_1540 0.79 +0.2 1,626,345 - HP15_1540 0.79 -0.1 1,626,345 - HP15_1540 0.79 -1.6 1,626,345 - HP15_1540 0.79 -1.3 1,626,384 + HP15_1540 0.81 +1.0 1,626,417 - HP15_1540 0.83 -1.3 1,626,533 - HP15_1540 0.89 +0.5 1,626,646 + -0.5 1,626,697 - +0.3 1,626,707 - -0.1 1,626,751 - +0.2 1,626,858 + HP15_1541 0.18 -0.6 1,626,900 - HP15_1541 0.25 -0.5 1,627,230 + HP15_1541 0.79 -1.2 1,627,247 + HP15_1541 0.82 +0.7 1,627,483 - HP15_1542 0.49 -0.8 1,627,499 + HP15_1542 0.57 +1.5 1,627,665 + HP15_1543 0.11 -0.6 1,627,684 - HP15_1543 0.13 +1.9 1,627,685 - HP15_1543 0.13 +1.7 1,627,740 - HP15_1543 0.21 +0.2 1,627,779 - HP15_1543 0.26 +0.5 1,627,808 - HP15_1543 0.30 -0.9 1,628,139 + HP15_1543 0.74 +1.4 1,628,242 - HP15_1543 0.88 -0.2 1,628,328 - -0.5
Or see this region's nucleotide sequence