Strain Fitness in Marinobacter adhaerens HP15 around HP15_1294
Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment B, time point 7 |
---|---|---|---|---|---|
remove | |||||
1,354,421 | - | HP15_1293 | 0.48 | +1.0 | |
1,354,479 | + | HP15_1293 | 0.54 | -2.1 | |
1,354,487 | - | HP15_1293 | 0.54 | +1.9 | |
1,354,487 | - | HP15_1293 | 0.54 | +0.2 | |
1,354,591 | + | HP15_1293 | 0.63 | -2.2 | |
1,354,632 | + | HP15_1293 | 0.67 | +2.2 | |
1,354,781 | + | HP15_1293 | 0.80 | +1.4 | |
1,354,817 | - | HP15_1293 | 0.83 | -0.2 | |
1,354,886 | + | HP15_1293 | 0.89 | -0.7 | |
1,354,941 | - | -1.6 | |||
1,354,946 | - | +1.3 | |||
1,354,946 | - | +1.6 | |||
1,354,967 | - | -0.6 | |||
1,355,062 | - | +1.2 | |||
1,355,062 | - | +0.5 | |||
1,355,094 | - | -0.0 | |||
1,355,115 | - | -2.1 | |||
1,356,161 | + | HP15_1295 | 0.52 | +1.7 | |
1,356,180 | + | HP15_1295 | 0.55 | -0.1 | |
1,356,188 | - | HP15_1295 | 0.56 | -1.1 | |
1,356,427 | + | +0.2 | |||
1,356,460 | - | -1.0 | |||
1,356,490 | - | -0.6 | |||
1,356,496 | + | +0.8 | |||
1,356,501 | + | +1.3 | |||
1,356,602 | - | -0.1 | |||
1,356,664 | + | HP15_1296 | 0.11 | +0.7 |
Or see this region's nucleotide sequence