Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_129 and HP15_130 are separated by 104 nucleotides HP15_130 and HP15_131 are separated by 71 nucleotides HP15_131 and HP15_132 are separated by 302 nucleotides
HP15_129: HP15_129 - RecT protein, at 135,718 to 136,674
_129
HP15_130: HP15_130 - conserved hypothetical protein, at 136,779 to 137,042
_130
HP15_131: HP15_131 - endonuclease-like phage-related protein, at 137,114 to 138,118
_131
HP15_132: HP15_132 - CobS protein, at 138,421 to 139,380
_132
Position (kb)
137
138
139 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 136.129 kb on + strand, within HP15_129 at 136.148 kb on + strand, within HP15_129 at 136.404 kb on + strand, within HP15_129 at 136.409 kb on + strand, within HP15_129 at 136.501 kb on + strand, within HP15_129 at 136.501 kb on - strand, within HP15_129 at 136.506 kb on - strand, within HP15_129 at 136.509 kb on - strand, within HP15_129 at 136.509 kb on - strand, within HP15_129 at 136.511 kb on - strand, within HP15_129 at 136.511 kb on - strand, within HP15_129 at 136.511 kb on - strand, within HP15_129 at 136.600 kb on + strand at 136.605 kb on + strand at 136.613 kb on - strand at 136.615 kb on - strand at 136.626 kb on + strand at 136.646 kb on - strand at 136.651 kb on - strand at 136.656 kb on - strand at 136.676 kb on + strand at 136.693 kb on - strand at 136.706 kb on - strand at 136.803 kb on - strand at 136.814 kb on + strand, within HP15_130 at 136.860 kb on + strand, within HP15_130 at 136.865 kb on - strand, within HP15_130 at 136.981 kb on + strand, within HP15_130 at 136.991 kb on + strand, within HP15_130 at 136.999 kb on - strand, within HP15_130 at 137.009 kb on - strand, within HP15_130 at 137.027 kb on + strand at 137.029 kb on + strand at 137.035 kb on - strand at 137.038 kb on + strand at 137.095 kb on - strand at 137.096 kb on + strand at 137.130 kb on + strand at 137.169 kb on + strand at 137.208 kb on + strand at 137.208 kb on + strand at 137.208 kb on + strand at 137.208 kb on + strand at 137.208 kb on + strand at 137.208 kb on + strand at 137.216 kb on - strand, within HP15_131 at 137.216 kb on - strand, within HP15_131 at 137.274 kb on - strand, within HP15_131 at 137.289 kb on - strand, within HP15_131 at 137.299 kb on + strand, within HP15_131 at 137.423 kb on + strand, within HP15_131 at 137.472 kb on - strand, within HP15_131 at 137.472 kb on - strand, within HP15_131 at 137.523 kb on - strand, within HP15_131 at 137.536 kb on + strand, within HP15_131 at 137.539 kb on - strand, within HP15_131 at 137.591 kb on + strand, within HP15_131 at 137.631 kb on + strand, within HP15_131 at 137.683 kb on + strand, within HP15_131 at 137.691 kb on - strand, within HP15_131 at 137.691 kb on - strand, within HP15_131 at 137.735 kb on - strand, within HP15_131 at 137.787 kb on - strand, within HP15_131 at 137.803 kb on + strand, within HP15_131 at 137.811 kb on - strand, within HP15_131 at 137.832 kb on - strand, within HP15_131 at 137.883 kb on - strand, within HP15_131 at 137.893 kb on - strand, within HP15_131 at 137.908 kb on - strand, within HP15_131 at 137.963 kb on + strand, within HP15_131 at 137.968 kb on + strand, within HP15_131 at 137.976 kb on + strand, within HP15_131 at 138.072 kb on - strand at 138.096 kb on - strand at 138.176 kb on + strand at 138.181 kb on + strand at 138.199 kb on - strand at 138.310 kb on - strand at 138.440 kb on - strand at 138.457 kb on + strand at 138.574 kb on + strand, within HP15_132 at 138.637 kb on + strand, within HP15_132 at 138.642 kb on - strand, within HP15_132 at 138.645 kb on - strand, within HP15_132 at 138.680 kb on + strand, within HP15_132 at 138.693 kb on - strand, within HP15_132 at 138.698 kb on - strand, within HP15_132 at 138.698 kb on - strand, within HP15_132 at 138.707 kb on + strand, within HP15_132 at 138.849 kb on + strand, within HP15_132 at 138.995 kb on + strand, within HP15_132 at 139.003 kb on - strand, within HP15_132 at 139.019 kb on + strand, within HP15_132 at 139.050 kb on - strand, within HP15_132 at 139.102 kb on - strand, within HP15_132
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 136,129 + HP15_129 0.43 +0.9 136,148 + HP15_129 0.45 -0.0 136,404 + HP15_129 0.72 +1.1 136,409 + HP15_129 0.72 +1.3 136,501 + HP15_129 0.82 +1.5 136,501 - HP15_129 0.82 +1.4 136,506 - HP15_129 0.82 +3.1 136,509 - HP15_129 0.83 +0.6 136,509 - HP15_129 0.83 +0.7 136,511 - HP15_129 0.83 -0.4 136,511 - HP15_129 0.83 +1.6 136,511 - HP15_129 0.83 +2.1 136,600 + -0.3 136,605 + -0.1 136,613 - +0.6 136,615 - -0.8 136,626 + +0.1 136,646 - +1.9 136,651 - +0.1 136,656 - -0.6 136,676 + +0.4 136,693 - -0.5 136,706 - -1.1 136,803 - -0.9 136,814 + HP15_130 0.13 -0.4 136,860 + HP15_130 0.31 +0.3 136,865 - HP15_130 0.33 -0.6 136,981 + HP15_130 0.77 +1.1 136,991 + HP15_130 0.80 -2.2 136,999 - HP15_130 0.83 -0.7 137,009 - HP15_130 0.87 -0.3 137,027 + -1.0 137,029 + -0.5 137,035 - +1.0 137,038 + -1.0 137,095 - -0.4 137,096 + -0.3 137,130 + +0.4 137,169 + +0.5 137,208 + -0.5 137,208 + +2.9 137,208 + +2.0 137,208 + -0.5 137,208 + +0.3 137,208 + +0.7 137,216 - HP15_131 0.10 +1.3 137,216 - HP15_131 0.10 -1.0 137,274 - HP15_131 0.16 -0.8 137,289 - HP15_131 0.17 +0.9 137,299 + HP15_131 0.18 +0.4 137,423 + HP15_131 0.31 -1.2 137,472 - HP15_131 0.36 -0.7 137,472 - HP15_131 0.36 +0.8 137,523 - HP15_131 0.41 -0.7 137,536 + HP15_131 0.42 -1.3 137,539 - HP15_131 0.42 -2.6 137,591 + HP15_131 0.47 +1.4 137,631 + HP15_131 0.51 -1.0 137,683 + HP15_131 0.57 -2.3 137,691 - HP15_131 0.57 +0.1 137,691 - HP15_131 0.57 +0.5 137,735 - HP15_131 0.62 +0.6 137,787 - HP15_131 0.67 +1.2 137,803 + HP15_131 0.69 -0.1 137,811 - HP15_131 0.69 -1.6 137,832 - HP15_131 0.71 -1.8 137,883 - HP15_131 0.77 -0.1 137,893 - HP15_131 0.78 +0.9 137,908 - HP15_131 0.79 +1.0 137,963 + HP15_131 0.84 -0.6 137,968 + HP15_131 0.85 -0.9 137,976 + HP15_131 0.86 -0.6 138,072 - +0.1 138,096 - +1.3 138,176 + -1.2 138,181 + +1.0 138,199 - -0.1 138,310 - +1.9 138,440 - +2.9 138,457 + +1.4 138,574 + HP15_132 0.16 -0.5 138,637 + HP15_132 0.23 +1.3 138,642 - HP15_132 0.23 +2.5 138,645 - HP15_132 0.23 +0.5 138,680 + HP15_132 0.27 +0.6 138,693 - HP15_132 0.28 +1.7 138,698 - HP15_132 0.29 +0.0 138,698 - HP15_132 0.29 -0.8 138,707 + HP15_132 0.30 +2.5 138,849 + HP15_132 0.45 -1.2 138,995 + HP15_132 0.60 -3.3 139,003 - HP15_132 0.61 -0.1 139,019 + HP15_132 0.62 -2.0 139,050 - HP15_132 0.66 +0.9 139,102 - HP15_132 0.71 -2.0
Or see this region's nucleotide sequence