Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1223 and HP15_1224 are separated by 12 nucleotides HP15_1224 and HP15_1225 overlap by 1 nucleotides HP15_1225 and HP15_1226 are separated by 57 nucleotides HP15_1226 and HP15_1227 overlap by 11 nucleotides
HP15_1223: HP15_1223 - protein YaaA, at 1,272,717 to 1,273,487
_1223
HP15_1224: HP15_1224 - glutaredoxin 2, at 1,273,500 to 1,273,733
_1224
HP15_1225: HP15_1225 - oxidoreductase, short chain dehydrogenase/reductase family, at 1,273,733 to 1,274,482
_1225
HP15_1226: HP15_1226 - 2-phosphoglycolate phosphatase, prokaryotic, at 1,274,540 to 1,275,211
_1226
HP15_1227: HP15_1227 - 3-demethylubiquinone-9 3-methyltransferase, at 1,275,201 to 1,275,941
_1227
Position (kb) 1273
1274
1275 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1272.774 kb on + strand at 1272.796 kb on + strand, within HP15_1223 at 1272.815 kb on + strand, within HP15_1223 at 1272.823 kb on - strand, within HP15_1223 at 1272.883 kb on + strand, within HP15_1223 at 1272.985 kb on - strand, within HP15_1223 at 1273.542 kb on + strand, within HP15_1224 at 1273.550 kb on - strand, within HP15_1224 at 1273.678 kb on + strand, within HP15_1224 at 1273.698 kb on - strand, within HP15_1224 at 1274.002 kb on - strand, within HP15_1225 at 1274.092 kb on - strand, within HP15_1225 at 1274.189 kb on - strand, within HP15_1225 at 1274.270 kb on - strand, within HP15_1225 at 1274.390 kb on - strand, within HP15_1225 at 1274.484 kb on + strand at 1274.486 kb on - strand at 1275.206 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 1,272,774 + -0.3 1,272,796 + HP15_1223 0.10 -0.6 1,272,815 + HP15_1223 0.13 +0.3 1,272,823 - HP15_1223 0.14 -0.5 1,272,883 + HP15_1223 0.22 -1.5 1,272,985 - HP15_1223 0.35 +0.4 1,273,542 + HP15_1224 0.18 -1.9 1,273,550 - HP15_1224 0.21 -0.7 1,273,678 + HP15_1224 0.76 -0.9 1,273,698 - HP15_1224 0.85 +0.3 1,274,002 - HP15_1225 0.36 -3.1 1,274,092 - HP15_1225 0.48 -0.9 1,274,189 - HP15_1225 0.61 +0.0 1,274,270 - HP15_1225 0.72 +0.5 1,274,390 - HP15_1225 0.88 -3.1 1,274,484 + +0.2 1,274,486 - -0.9 1,275,206 - -1.1
Or see this region's nucleotide sequence