Strain Fitness in Marinobacter adhaerens HP15 around HP15_1154
Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | monoculture; Experiment B, time point 7 |
---|---|---|---|---|---|
remove | |||||
1,187,245 | + | HP15_1153 | 0.12 | -0.2 | |
1,187,415 | - | HP15_1153 | 0.31 | -0.6 | |
1,187,515 | - | HP15_1153 | 0.42 | +0.8 | |
1,187,579 | - | HP15_1153 | 0.49 | +2.1 | |
1,187,771 | - | HP15_1153 | 0.71 | +0.6 | |
1,187,981 | - | -0.7 | |||
1,187,994 | - | +1.5 | |||
1,188,004 | - | +1.4 | |||
1,188,080 | + | +0.4 | |||
1,188,175 | + | HP15_1154 | 0.14 | -0.4 | |
1,188,378 | + | HP15_1154 | 0.62 | -0.9 | |
1,188,378 | + | HP15_1154 | 0.62 | -0.4 | |
1,188,386 | - | HP15_1154 | 0.64 | +0.6 | |
1,188,509 | - | +0.4 | |||
1,188,538 | + | +1.7 | |||
1,188,546 | - | -0.7 | |||
1,188,546 | - | +0.0 | |||
1,188,756 | + | +2.0 | |||
1,188,808 | + | HP15_1155 | 0.12 | +2.2 | |
1,188,814 | - | HP15_1155 | 0.12 | -0.2 | |
1,188,851 | - | HP15_1155 | 0.15 | -2.0 | |
1,189,114 | + | HP15_1155 | 0.33 | -0.8 | |
1,189,204 | - | HP15_1155 | 0.40 | -2.4 | |
1,189,257 | + | HP15_1155 | 0.43 | +0.2 | |
1,189,299 | + | HP15_1155 | 0.46 | -0.0 | |
1,189,327 | + | HP15_1155 | 0.48 | +0.2 | |
1,189,367 | + | HP15_1155 | 0.51 | -0.1 | |
1,189,388 | - | HP15_1155 | 0.53 | -0.1 | |
1,189,458 | - | HP15_1155 | 0.57 | +0.2 | |
1,189,476 | - | HP15_1155 | 0.59 | +0.6 | |
1,189,476 | - | HP15_1155 | 0.59 | -1.3 |
Or see this region's nucleotide sequence