Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1120 and HP15_1121 are separated by 169 nucleotides HP15_1121 and HP15_1122 overlap by 4 nucleotides HP15_1122 and HP15_1123 are separated by 293 nucleotides HP15_1123 and HP15_1124 are separated by 15 nucleotides
HP15_1120: HP15_1120 - alpha/beta hydrolase fold protein, at 1,148,733 to 1,149,440
_1120
HP15_1121: HP15_1121 - thioesterase superfamily protein, at 1,149,610 to 1,150,116
_1121
HP15_1122: HP15_1122 - conserved hypothetical protein, thioesterase superfamily, at 1,150,113 to 1,150,562
_1122
HP15_1123: HP15_1123 - transcriptional regulator, TetR family, at 1,150,856 to 1,151,470
_1123
HP15_1124: HP15_1124 - conserved hypothetical protein, at 1,151,486 to 1,152,439
_1124
Position (kb)
1150
1151 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1149.315 kb on - strand, within HP15_1120 at 1149.333 kb on - strand, within HP15_1120 at 1149.338 kb on + strand, within HP15_1120 at 1149.346 kb on - strand, within HP15_1120 at 1149.346 kb on - strand, within HP15_1120 at 1149.346 kb on - strand, within HP15_1120 at 1149.531 kb on - strand at 1149.536 kb on - strand at 1149.621 kb on - strand at 1149.698 kb on + strand, within HP15_1121 at 1149.818 kb on + strand, within HP15_1121 at 1149.948 kb on + strand, within HP15_1121 at 1149.956 kb on - strand, within HP15_1121 at 1149.966 kb on - strand, within HP15_1121 at 1149.996 kb on - strand, within HP15_1121 at 1150.002 kb on + strand, within HP15_1121 at 1150.095 kb on - strand at 1150.122 kb on - strand at 1150.212 kb on - strand, within HP15_1122 at 1150.214 kb on + strand, within HP15_1122 at 1150.404 kb on + strand, within HP15_1122 at 1150.454 kb on + strand, within HP15_1122 at 1150.466 kb on + strand, within HP15_1122 at 1150.484 kb on - strand, within HP15_1122 at 1150.522 kb on - strand at 1150.582 kb on + strand at 1150.587 kb on - strand at 1150.878 kb on - strand at 1150.907 kb on + strand at 1150.920 kb on - strand, within HP15_1123 at 1151.073 kb on + strand, within HP15_1123 at 1151.097 kb on - strand, within HP15_1123 at 1151.254 kb on - strand, within HP15_1123 at 1151.343 kb on + strand, within HP15_1123 at 1151.343 kb on + strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.351 kb on - strand, within HP15_1123 at 1151.356 kb on + strand, within HP15_1123 at 1151.409 kb on + strand at 1151.446 kb on + strand at 1151.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 1,149,315 - HP15_1120 0.82 +2.0 1,149,333 - HP15_1120 0.85 -1.9 1,149,338 + HP15_1120 0.85 +1.5 1,149,346 - HP15_1120 0.87 +2.1 1,149,346 - HP15_1120 0.87 -0.9 1,149,346 - HP15_1120 0.87 -0.5 1,149,531 - -0.0 1,149,536 - -0.8 1,149,621 - -0.5 1,149,698 + HP15_1121 0.17 +1.6 1,149,818 + HP15_1121 0.41 +2.0 1,149,948 + HP15_1121 0.67 +0.0 1,149,956 - HP15_1121 0.68 -0.1 1,149,966 - HP15_1121 0.70 +1.5 1,149,996 - HP15_1121 0.76 -0.1 1,150,002 + HP15_1121 0.77 +0.5 1,150,095 - -0.6 1,150,122 - -0.3 1,150,212 - HP15_1122 0.22 +1.0 1,150,214 + HP15_1122 0.22 -2.4 1,150,404 + HP15_1122 0.65 -0.7 1,150,454 + HP15_1122 0.76 +0.1 1,150,466 + HP15_1122 0.78 -1.1 1,150,484 - HP15_1122 0.82 +1.2 1,150,522 - -1.4 1,150,582 + -2.0 1,150,587 - -0.0 1,150,878 - +1.3 1,150,907 + +1.3 1,150,920 - HP15_1123 0.10 -1.5 1,151,073 + HP15_1123 0.35 +1.4 1,151,097 - HP15_1123 0.39 -1.4 1,151,254 - HP15_1123 0.65 -0.6 1,151,343 + HP15_1123 0.79 +1.8 1,151,343 + HP15_1123 0.79 -0.6 1,151,351 - HP15_1123 0.80 -0.3 1,151,351 - HP15_1123 0.80 +0.8 1,151,351 - HP15_1123 0.80 +1.5 1,151,351 - HP15_1123 0.80 -1.9 1,151,351 - HP15_1123 0.80 +1.4 1,151,356 + HP15_1123 0.81 -1.0 1,151,409 + -0.1 1,151,446 + +1.0 1,151,457 - -0.7
Or see this region's nucleotide sequence