Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1080 and HP15_1081 are separated by 276 nucleotides HP15_1081 and HP15_1082 are separated by 0 nucleotides
HP15_1080: HP15_1080 - transcriptional Regulator, Crp/Fnr family protein, at 1,108,443 to 1,109,078
_1080
HP15_1081: HP15_1081 - phage integrase family protein, at 1,109,355 to 1,110,704
_1081
HP15_1082: HP15_1082 - hypothetical protein, at 1,110,705 to 1,111,835
_1082
Position (kb)
1109
1110
1111 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1108.480 kb on - strand at 1108.603 kb on + strand, within HP15_1080 at 1108.603 kb on + strand, within HP15_1080 at 1108.611 kb on - strand, within HP15_1080 at 1108.670 kb on + strand, within HP15_1080 at 1108.732 kb on - strand, within HP15_1080 at 1108.853 kb on - strand, within HP15_1080 at 1108.870 kb on - strand, within HP15_1080 at 1108.880 kb on - strand, within HP15_1080 at 1108.968 kb on - strand, within HP15_1080 at 1108.973 kb on - strand, within HP15_1080 at 1109.156 kb on + strand at 1109.173 kb on + strand at 1109.173 kb on + strand at 1109.181 kb on + strand at 1109.557 kb on + strand, within HP15_1081 at 1109.557 kb on + strand, within HP15_1081 at 1109.557 kb on + strand, within HP15_1081 at 1109.557 kb on + strand, within HP15_1081 at 1109.560 kb on - strand, within HP15_1081 at 1109.644 kb on - strand, within HP15_1081 at 1109.937 kb on - strand, within HP15_1081 at 1110.007 kb on + strand, within HP15_1081 at 1110.199 kb on - strand, within HP15_1081 at 1110.199 kb on - strand, within HP15_1081 at 1110.310 kb on - strand, within HP15_1081 at 1110.355 kb on - strand, within HP15_1081 at 1110.380 kb on - strand, within HP15_1081 at 1110.390 kb on - strand, within HP15_1081 at 1110.425 kb on - strand, within HP15_1081 at 1110.542 kb on + strand, within HP15_1081 at 1110.544 kb on + strand, within HP15_1081 at 1110.550 kb on - strand, within HP15_1081 at 1110.550 kb on - strand, within HP15_1081 at 1110.558 kb on - strand, within HP15_1081 at 1110.568 kb on - strand, within HP15_1081 at 1110.628 kb on + strand at 1110.818 kb on + strand, within HP15_1082 at 1110.818 kb on + strand, within HP15_1082 at 1110.818 kb on + strand, within HP15_1082 at 1110.826 kb on - strand, within HP15_1082 at 1110.826 kb on - strand, within HP15_1082 at 1110.826 kb on - strand, within HP15_1082 at 1110.826 kb on - strand, within HP15_1082 at 1110.845 kb on + strand, within HP15_1082 at 1110.850 kb on + strand, within HP15_1082 at 1110.888 kb on - strand, within HP15_1082 at 1110.935 kb on - strand, within HP15_1082 at 1110.935 kb on - strand, within HP15_1082 at 1111.226 kb on + strand, within HP15_1082 at 1111.226 kb on + strand, within HP15_1082 at 1111.234 kb on - strand, within HP15_1082 at 1111.234 kb on - strand, within HP15_1082 at 1111.234 kb on - strand, within HP15_1082 at 1111.281 kb on + strand, within HP15_1082 at 1111.289 kb on - strand, within HP15_1082
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 1,108,480 - -0.7 1,108,603 + HP15_1080 0.25 -0.8 1,108,603 + HP15_1080 0.25 -0.4 1,108,611 - HP15_1080 0.26 -0.5 1,108,670 + HP15_1080 0.36 +0.2 1,108,732 - HP15_1080 0.45 -2.2 1,108,853 - HP15_1080 0.64 -0.6 1,108,870 - HP15_1080 0.67 +0.9 1,108,880 - HP15_1080 0.69 +0.4 1,108,968 - HP15_1080 0.83 +2.0 1,108,973 - HP15_1080 0.83 -0.8 1,109,156 + -2.0 1,109,173 + +0.6 1,109,173 + +2.0 1,109,181 + +1.2 1,109,557 + HP15_1081 0.15 +1.0 1,109,557 + HP15_1081 0.15 +0.0 1,109,557 + HP15_1081 0.15 -1.2 1,109,557 + HP15_1081 0.15 +2.6 1,109,560 - HP15_1081 0.15 +0.3 1,109,644 - HP15_1081 0.21 +0.4 1,109,937 - HP15_1081 0.43 -0.6 1,110,007 + HP15_1081 0.48 -1.3 1,110,199 - HP15_1081 0.63 -0.7 1,110,199 - HP15_1081 0.63 -0.7 1,110,310 - HP15_1081 0.71 -1.1 1,110,355 - HP15_1081 0.74 -2.3 1,110,380 - HP15_1081 0.76 -0.7 1,110,390 - HP15_1081 0.77 -0.7 1,110,425 - HP15_1081 0.79 -1.0 1,110,542 + HP15_1081 0.88 -0.6 1,110,544 + HP15_1081 0.88 +0.8 1,110,550 - HP15_1081 0.89 +0.2 1,110,550 - HP15_1081 0.89 -0.5 1,110,558 - HP15_1081 0.89 -1.4 1,110,568 - HP15_1081 0.90 -1.3 1,110,628 + -0.4 1,110,818 + HP15_1082 0.10 -1.5 1,110,818 + HP15_1082 0.10 +1.2 1,110,818 + HP15_1082 0.10 -0.7 1,110,826 - HP15_1082 0.11 -0.9 1,110,826 - HP15_1082 0.11 +0.3 1,110,826 - HP15_1082 0.11 -2.4 1,110,826 - HP15_1082 0.11 -1.7 1,110,845 + HP15_1082 0.12 +1.8 1,110,850 + HP15_1082 0.13 -1.1 1,110,888 - HP15_1082 0.16 -1.7 1,110,935 - HP15_1082 0.20 +2.0 1,110,935 - HP15_1082 0.20 -0.4 1,111,226 + HP15_1082 0.46 +0.6 1,111,226 + HP15_1082 0.46 +0.3 1,111,234 - HP15_1082 0.47 +2.4 1,111,234 - HP15_1082 0.47 -3.3 1,111,234 - HP15_1082 0.47 +2.4 1,111,281 + HP15_1082 0.51 -0.6 1,111,289 - HP15_1082 0.52 +0.0
Or see this region's nucleotide sequence