Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1012 and HP15_1013 are separated by 2 nucleotides HP15_1013 and HP15_1014 are separated by 55 nucleotides HP15_1014 and HP15_1015 are separated by 27 nucleotides HP15_1015 and HP15_1016 are separated by 395 nucleotides
HP15_1012: HP15_1012 - nitrate transporter component, NrtA, at 1,024,910 to 1,026,331
_1012
HP15_1013: HP15_1013 - nitrate transport system permease protein, at 1,026,334 to 1,027,161
_1013
HP15_1014: HP15_1014 - nitrate ABC transporter, ATPase subunits C and D, at 1,027,217 to 1,028,125
_1014
HP15_1015: HP15_1015 - cyanate lyase, at 1,028,153 to 1,028,596
_1015
HP15_1016: HP15_1016 - acetolactate synthase II, small subunit-like protein, at 1,028,992 to 1,029,270
_1016
Position (kb)
1027
1028
1029 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1026.228 kb on - strand at 1026.228 kb on - strand at 1026.228 kb on - strand at 1026.228 kb on - strand at 1026.230 kb on + strand at 1026.230 kb on + strand at 1026.251 kb on + strand at 1026.278 kb on + strand at 1026.348 kb on + strand at 1026.358 kb on + strand at 1026.436 kb on + strand, within HP15_1013 at 1026.439 kb on - strand, within HP15_1013 at 1026.538 kb on - strand, within HP15_1013 at 1026.575 kb on + strand, within HP15_1013 at 1026.593 kb on - strand, within HP15_1013 at 1026.607 kb on - strand, within HP15_1013 at 1026.612 kb on - strand, within HP15_1013 at 1026.729 kb on + strand, within HP15_1013 at 1026.738 kb on + strand, within HP15_1013 at 1026.740 kb on + strand, within HP15_1013 at 1026.747 kb on - strand, within HP15_1013 at 1026.748 kb on - strand, within HP15_1013 at 1026.855 kb on + strand, within HP15_1013 at 1026.888 kb on - strand, within HP15_1013 at 1026.915 kb on + strand, within HP15_1013 at 1026.940 kb on + strand, within HP15_1013 at 1027.057 kb on + strand, within HP15_1013 at 1027.060 kb on - strand, within HP15_1013 at 1027.062 kb on + strand, within HP15_1013 at 1027.065 kb on - strand, within HP15_1013 at 1027.115 kb on + strand at 1027.156 kb on + strand at 1027.190 kb on + strand at 1027.199 kb on + strand at 1027.402 kb on - strand, within HP15_1014 at 1027.507 kb on + strand, within HP15_1014 at 1027.507 kb on + strand, within HP15_1014 at 1027.713 kb on - strand, within HP15_1014 at 1028.057 kb on - strand at 1028.134 kb on - strand at 1028.134 kb on - strand at 1028.173 kb on - strand at 1028.198 kb on + strand, within HP15_1015 at 1028.214 kb on + strand, within HP15_1015 at 1028.215 kb on - strand, within HP15_1015 at 1028.303 kb on + strand, within HP15_1015 at 1028.328 kb on + strand, within HP15_1015 at 1028.375 kb on + strand, within HP15_1015 at 1028.547 kb on + strand, within HP15_1015 at 1028.547 kb on + strand, within HP15_1015 at 1028.572 kb on + strand at 1028.572 kb on + strand at 1028.634 kb on - strand at 1028.761 kb on - strand at 1028.862 kb on - strand at 1028.983 kb on + strand at 1028.986 kb on - strand at 1029.115 kb on + strand, within HP15_1016
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 1,026,228 - -1.0 1,026,228 - -0.7 1,026,228 - +0.6 1,026,228 - -0.9 1,026,230 + -0.8 1,026,230 + -0.8 1,026,251 + +1.9 1,026,278 + -0.4 1,026,348 + -0.3 1,026,358 + +0.1 1,026,436 + HP15_1013 0.12 -1.1 1,026,439 - HP15_1013 0.13 -0.1 1,026,538 - HP15_1013 0.25 +1.1 1,026,575 + HP15_1013 0.29 -0.3 1,026,593 - HP15_1013 0.31 -0.6 1,026,607 - HP15_1013 0.33 +0.2 1,026,612 - HP15_1013 0.34 -0.3 1,026,729 + HP15_1013 0.48 -1.9 1,026,738 + HP15_1013 0.49 -0.0 1,026,740 + HP15_1013 0.49 +0.7 1,026,747 - HP15_1013 0.50 +1.3 1,026,748 - HP15_1013 0.50 -0.0 1,026,855 + HP15_1013 0.63 -0.1 1,026,888 - HP15_1013 0.67 -0.6 1,026,915 + HP15_1013 0.70 +0.3 1,026,940 + HP15_1013 0.73 -0.9 1,027,057 + HP15_1013 0.87 +2.0 1,027,060 - HP15_1013 0.88 +0.4 1,027,062 + HP15_1013 0.88 +1.0 1,027,065 - HP15_1013 0.88 +0.9 1,027,115 + -1.5 1,027,156 + -0.7 1,027,190 + -0.7 1,027,199 + +1.5 1,027,402 - HP15_1014 0.20 +3.1 1,027,507 + HP15_1014 0.32 -1.0 1,027,507 + HP15_1014 0.32 +1.3 1,027,713 - HP15_1014 0.55 +0.1 1,028,057 - +1.0 1,028,134 - -0.7 1,028,134 - +0.9 1,028,173 - +0.5 1,028,198 + HP15_1015 0.10 +1.9 1,028,214 + HP15_1015 0.14 +0.1 1,028,215 - HP15_1015 0.14 +0.5 1,028,303 + HP15_1015 0.34 +0.5 1,028,328 + HP15_1015 0.39 -1.9 1,028,375 + HP15_1015 0.50 +0.6 1,028,547 + HP15_1015 0.89 -0.4 1,028,547 + HP15_1015 0.89 +1.7 1,028,572 + +0.6 1,028,572 + -3.1 1,028,634 - -2.1 1,028,761 - -0.4 1,028,862 - -0.8 1,028,983 + +1.1 1,028,986 - -0.4 1,029,115 + HP15_1016 0.44 +2.7
Or see this region's nucleotide sequence