Experiment: monoculture; Experiment B, time point 7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1010 and HP15_1011 overlap by 14 nucleotides HP15_1011 and HP15_1012 are separated by 312 nucleotides
HP15_1010: HP15_1010 - sodium-dependent transporter, NSS family protein, at 1,021,357 to 1,022,694
_1010
HP15_1011: HP15_1011 - two component, sigma54 specific, transcriptional regulator, Fis family, at 1,022,681 to 1,024,597
_1011
HP15_1012: HP15_1012 - nitrate transporter component, NrtA, at 1,024,910 to 1,026,331
_1012
Position (kb)
1022
1023
1024
1025 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1021.684 kb on - strand, within HP15_1010 at 1021.922 kb on + strand, within HP15_1010 at 1022.042 kb on - strand, within HP15_1010 at 1022.083 kb on + strand, within HP15_1010 at 1022.083 kb on + strand, within HP15_1010 at 1022.083 kb on + strand, within HP15_1010 at 1022.091 kb on - strand, within HP15_1010 at 1022.311 kb on - strand, within HP15_1010 at 1022.490 kb on - strand, within HP15_1010 at 1022.566 kb on + strand at 1022.574 kb on - strand at 1022.593 kb on - strand at 1022.695 kb on + strand at 1022.795 kb on - strand at 1022.809 kb on + strand at 1022.817 kb on - strand at 1022.967 kb on - strand, within HP15_1011 at 1023.072 kb on + strand, within HP15_1011 at 1023.072 kb on - strand, within HP15_1011 at 1023.234 kb on - strand, within HP15_1011 at 1023.320 kb on - strand, within HP15_1011 at 1023.388 kb on + strand, within HP15_1011 at 1023.388 kb on + strand, within HP15_1011 at 1023.432 kb on + strand, within HP15_1011 at 1023.678 kb on + strand, within HP15_1011 at 1023.681 kb on - strand, within HP15_1011 at 1023.773 kb on + strand, within HP15_1011 at 1023.813 kb on - strand, within HP15_1011 at 1023.848 kb on + strand, within HP15_1011 at 1023.947 kb on + strand, within HP15_1011 at 1023.947 kb on + strand, within HP15_1011 at 1023.958 kb on + strand, within HP15_1011 at 1023.958 kb on + strand, within HP15_1011 at 1024.139 kb on + strand, within HP15_1011 at 1024.146 kb on + strand, within HP15_1011 at 1024.167 kb on - strand, within HP15_1011 at 1024.203 kb on - strand, within HP15_1011 at 1024.235 kb on - strand, within HP15_1011 at 1024.360 kb on - strand, within HP15_1011 at 1024.369 kb on + strand, within HP15_1011 at 1024.411 kb on + strand at 1024.469 kb on + strand at 1024.502 kb on - strand at 1024.811 kb on - strand at 1024.830 kb on + strand at 1024.969 kb on + strand at 1025.037 kb on + strand at 1025.200 kb on - strand, within HP15_1012 at 1025.222 kb on + strand, within HP15_1012 at 1025.232 kb on + strand, within HP15_1012 at 1025.232 kb on + strand, within HP15_1012 at 1025.248 kb on + strand, within HP15_1012 at 1025.349 kb on + strand, within HP15_1012 at 1025.357 kb on - strand, within HP15_1012 at 1025.357 kb on - strand, within HP15_1012 at 1025.460 kb on - strand, within HP15_1012 at 1025.559 kb on - strand, within HP15_1012 at 1025.570 kb on - strand, within HP15_1012 at 1025.570 kb on - strand, within HP15_1012
Per-strain Table
Position Strand Gene LocusTag Fraction monoculture; Experiment B, time point 7 remove 1,021,684 - HP15_1010 0.24 +1.3 1,021,922 + HP15_1010 0.42 -1.7 1,022,042 - HP15_1010 0.51 -2.1 1,022,083 + HP15_1010 0.54 +0.6 1,022,083 + HP15_1010 0.54 +1.0 1,022,083 + HP15_1010 0.54 -2.2 1,022,091 - HP15_1010 0.55 -0.7 1,022,311 - HP15_1010 0.71 +1.3 1,022,490 - HP15_1010 0.85 -1.3 1,022,566 + +0.8 1,022,574 - +1.1 1,022,593 - +0.8 1,022,695 + +0.2 1,022,795 - -0.2 1,022,809 + +0.6 1,022,817 - +1.1 1,022,967 - HP15_1011 0.15 +0.1 1,023,072 + HP15_1011 0.20 +0.3 1,023,072 - HP15_1011 0.20 -0.5 1,023,234 - HP15_1011 0.29 +0.7 1,023,320 - HP15_1011 0.33 -0.2 1,023,388 + HP15_1011 0.37 -0.4 1,023,388 + HP15_1011 0.37 -0.6 1,023,432 + HP15_1011 0.39 +1.6 1,023,678 + HP15_1011 0.52 -1.0 1,023,681 - HP15_1011 0.52 -2.0 1,023,773 + HP15_1011 0.57 -2.4 1,023,813 - HP15_1011 0.59 -0.8 1,023,848 + HP15_1011 0.61 +1.3 1,023,947 + HP15_1011 0.66 -1.7 1,023,947 + HP15_1011 0.66 -1.3 1,023,958 + HP15_1011 0.67 +1.2 1,023,958 + HP15_1011 0.67 -1.8 1,024,139 + HP15_1011 0.76 -0.6 1,024,146 + HP15_1011 0.76 +0.3 1,024,167 - HP15_1011 0.78 -0.6 1,024,203 - HP15_1011 0.79 -0.6 1,024,235 - HP15_1011 0.81 -1.4 1,024,360 - HP15_1011 0.88 +0.4 1,024,369 + HP15_1011 0.88 -0.0 1,024,411 + -4.3 1,024,469 + +1.7 1,024,502 - +0.3 1,024,811 - +1.0 1,024,830 + -0.7 1,024,969 + -1.1 1,025,037 + +0.4 1,025,200 - HP15_1012 0.20 +1.7 1,025,222 + HP15_1012 0.22 -0.3 1,025,232 + HP15_1012 0.23 +0.7 1,025,232 + HP15_1012 0.23 -2.8 1,025,248 + HP15_1012 0.24 -1.0 1,025,349 + HP15_1012 0.31 -2.8 1,025,357 - HP15_1012 0.31 +0.3 1,025,357 - HP15_1012 0.31 -0.5 1,025,460 - HP15_1012 0.39 +0.4 1,025,559 - HP15_1012 0.46 +1.2 1,025,570 - HP15_1012 0.46 +0.2 1,025,570 - HP15_1012 0.46 +1.0
Or see this region's nucleotide sequence